Capybara microvirus Cap1_SP_92

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W7N6|A0A4P8W7N6_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_92 OX=2584798 PE=4 SV=1
MM1 pKa = 8.0PLLQSQISIIEE12 pKa = 3.91NAFTVITSLTNGKK25 pKa = 10.07DD26 pKa = 3.21FVNFVDD32 pKa = 4.48SLPSGKK38 pKa = 9.85SCSIVSLNLGRR49 pKa = 11.84FKK51 pKa = 11.17LDD53 pKa = 3.3YY54 pKa = 9.49TPSAFSPFGVKK65 pKa = 9.8HH66 pKa = 5.48VFSDD70 pKa = 3.7SMSDD74 pKa = 3.95SSPLSCFSDD83 pKa = 3.83LSSFRR88 pKa = 11.84SVDD91 pKa = 3.32VLPFNDD97 pKa = 3.39

Molecular weight: 10.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W538|A0A4P8W538_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_92 OX=2584798 PE=4 SV=1
MM1 pKa = 7.09VKK3 pKa = 9.86IYY5 pKa = 10.55SCSGYY10 pKa = 10.08QYY12 pKa = 11.25HH13 pKa = 6.61SFNLLKK19 pKa = 10.62RR20 pKa = 11.84LIYY23 pKa = 10.7NLFSTRR29 pKa = 11.84DD30 pKa = 3.62YY31 pKa = 10.81TDD33 pKa = 3.86CSPVAGYY40 pKa = 10.95YY41 pKa = 10.66DD42 pKa = 3.9LVYY45 pKa = 10.6RR46 pKa = 11.84DD47 pKa = 4.86DD48 pKa = 3.93LCIGAFYY55 pKa = 9.85YY56 pKa = 10.23IPSSCKK62 pKa = 8.8FGYY65 pKa = 9.72VRR67 pKa = 11.84SSRR70 pKa = 11.84RR71 pKa = 11.84FKK73 pKa = 10.9YY74 pKa = 9.72VLYY77 pKa = 9.22HH78 pKa = 5.46YY79 pKa = 10.42RR80 pKa = 11.84VISLL84 pKa = 3.68

Molecular weight: 10.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1618

84

695

269.7

30.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.45 ± 0.795

1.36 ± 0.656

5.933 ± 0.491

4.265 ± 0.654

5.748 ± 0.836

4.635 ± 0.529

1.916 ± 0.305

5.315 ± 0.353

5.933 ± 0.841

9.085 ± 0.277

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.731 ± 0.225

6.489 ± 0.798

4.326 ± 0.504

4.141 ± 0.667

4.45 ± 0.727

11.063 ± 1.164

4.388 ± 0.258

6.922 ± 0.708

0.927 ± 0.195

6.922 ± 0.982
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski