Parafilimonas terrae

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Parafilimonas

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4249 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I5Y0K7|A0A1I5Y0K7_9BACT Uncharacterized protein OS=Parafilimonas terrae OX=1465490 GN=SAMN05444277_11068 PE=4 SV=1
MM1 pKa = 7.33KK2 pKa = 9.98TRR4 pKa = 11.84LLLFGLSALIVMHH17 pKa = 6.12THH19 pKa = 6.04AQSAGDD25 pKa = 3.8YY26 pKa = 10.08RR27 pKa = 11.84SKK29 pKa = 9.75QTGNWNDD36 pKa = 3.14AANWEE41 pKa = 4.61TFNGTNWVAATNYY54 pKa = 7.13PTATDD59 pKa = 4.15GEE61 pKa = 4.34LSIIATTNITCNVTDD76 pKa = 5.69NIDD79 pKa = 3.39QLTIEE84 pKa = 4.69AGGTLTIDD92 pKa = 3.09NTEE95 pKa = 4.09NFNLTAGPDD104 pKa = 3.56DD105 pKa = 5.37DD106 pKa = 5.34VDD108 pKa = 4.2LKK110 pKa = 11.0IYY112 pKa = 8.0GTLQWNKK119 pKa = 9.23GWAGNCGTWEE129 pKa = 4.1IYY131 pKa = 10.46SGGIANINCGSYY143 pKa = 9.37GTGCNTWNIKK153 pKa = 10.19PGGTMNFIHH162 pKa = 5.57VQCYY166 pKa = 10.45INGTTINNEE175 pKa = 3.55GTINFTPDD183 pKa = 2.86WEE185 pKa = 4.32NMYY188 pKa = 10.32VRR190 pKa = 11.84SNTPNSPGTIHH201 pKa = 6.62NKK203 pKa = 9.83PNGTVNMIKK212 pKa = 9.5TGNNGRR218 pKa = 11.84FGIASDD224 pKa = 4.04GNNGSEE230 pKa = 4.22NYY232 pKa = 10.24VKK234 pKa = 10.61FINEE238 pKa = 3.51GTLNLNEE245 pKa = 4.24GTEE248 pKa = 4.33LYY250 pKa = 10.84YY251 pKa = 10.8GGPGQTSSGISFEE264 pKa = 4.21NTGTINIANNAMLSNAGIFNFNGGNINGTGNALIRR299 pKa = 11.84QIGYY303 pKa = 9.2PGIWKK308 pKa = 10.7SNVPCNLPVNITFEE322 pKa = 4.93LKK324 pKa = 8.89TQLGGPAEE332 pKa = 4.16TTINGKK338 pKa = 9.31LRR340 pKa = 11.84FEE342 pKa = 4.5GRR344 pKa = 11.84LSNRR348 pKa = 11.84DD349 pKa = 3.41YY350 pKa = 11.78SEE352 pKa = 6.11DD353 pKa = 3.36IAKK356 pKa = 10.23LRR358 pKa = 11.84LSPTGTAILVSGYY371 pKa = 10.76LGGAVLTNEE380 pKa = 4.64GVITMPEE387 pKa = 3.61NWGSGLNWEE396 pKa = 5.23GIGKK400 pKa = 9.29FINKK404 pKa = 9.33GLLKK408 pKa = 9.85LTANQTLYY416 pKa = 10.1LHH418 pKa = 6.78NYY420 pKa = 5.33EE421 pKa = 4.55TEE423 pKa = 3.98NGDD426 pKa = 4.09FINEE430 pKa = 4.06GVVEE434 pKa = 4.56IGTGGNLLSNTNSGQTNDD452 pKa = 3.26FFKK455 pKa = 10.37NTSAGIIKK463 pKa = 10.51GNGYY467 pKa = 8.56VQFDD471 pKa = 3.54AGFSNNGAITPGTSPGILQFNGAQPLSANSTLEE504 pKa = 3.87IEE506 pKa = 4.7VKK508 pKa = 10.24DD509 pKa = 3.72ASGAGTGHH517 pKa = 7.0DD518 pKa = 3.3QLTRR522 pKa = 11.84SGDD525 pKa = 3.22LTLAGKK531 pKa = 10.67LEE533 pKa = 4.48VISTGNVPDD542 pKa = 4.18GSYY545 pKa = 10.11MIISLSSGTISGSFSEE561 pKa = 5.39LDD563 pKa = 3.31MPLGYY568 pKa = 8.85TLTVNSDD575 pKa = 3.52NVVLNYY581 pKa = 10.69ASDD584 pKa = 3.62MDD586 pKa = 5.01DD587 pKa = 4.02DD588 pKa = 4.69GVINEE593 pKa = 4.56EE594 pKa = 4.2DD595 pKa = 4.2CAPTDD600 pKa = 3.49ATKK603 pKa = 9.43WQSATLYY610 pKa = 10.2IDD612 pKa = 4.26ADD614 pKa = 3.73GDD616 pKa = 4.13GYY618 pKa = 11.3DD619 pKa = 3.78AGQEE623 pKa = 4.4TVCYY627 pKa = 9.72GATVPDD633 pKa = 5.47GYY635 pKa = 11.23SEE637 pKa = 4.21TSNGEE642 pKa = 3.88DD643 pKa = 5.29CNDD646 pKa = 3.51DD647 pKa = 3.73DD648 pKa = 6.45ANVHH652 pKa = 6.17SSQPYY657 pKa = 8.55YY658 pKa = 11.12ADD660 pKa = 3.32NDD662 pKa = 3.73GDD664 pKa = 4.35GFGDD668 pKa = 3.89AANTTSACSSTPPSGYY684 pKa = 8.51VTNNTDD690 pKa = 5.24CDD692 pKa = 4.46DD693 pKa = 4.39NDD695 pKa = 3.26NTIYY699 pKa = 10.53PGAPEE704 pKa = 5.08LPDD707 pKa = 5.09GKK709 pKa = 10.73DD710 pKa = 3.2NDD712 pKa = 4.51CDD714 pKa = 4.24GEE716 pKa = 4.24TDD718 pKa = 3.51EE719 pKa = 5.74GAGTTWYY726 pKa = 10.35EE727 pKa = 4.18DD728 pKa = 3.46ADD730 pKa = 3.85GDD732 pKa = 4.64GFGNPDD738 pKa = 2.9VSQIAVSQPEE748 pKa = 4.99GYY750 pKa = 10.35VADD753 pKa = 4.33NTDD756 pKa = 3.7CDD758 pKa = 4.14DD759 pKa = 3.91TKK761 pKa = 11.46LLYY764 pKa = 10.58ADD766 pKa = 4.07NDD768 pKa = 3.75GDD770 pKa = 4.2GFGAGSPVACGVDD783 pKa = 3.23NDD785 pKa = 4.73TDD787 pKa = 4.83CDD789 pKa = 4.72DD790 pKa = 4.96NDD792 pKa = 3.68DD793 pKa = 4.41TKK795 pKa = 10.53WQSGLLYY802 pKa = 10.05IDD804 pKa = 4.7FDD806 pKa = 4.82SDD808 pKa = 4.11NFDD811 pKa = 3.47AGQAQVCYY819 pKa = 10.09GAAIPLGYY827 pKa = 10.64NPISLGQDD835 pKa = 3.47CNDD838 pKa = 3.53HH839 pKa = 7.0DD840 pKa = 4.08MHH842 pKa = 7.19VHH844 pKa = 6.12TEE846 pKa = 3.59QTYY849 pKa = 8.77YY850 pKa = 11.37ADD852 pKa = 3.59YY853 pKa = 11.19DD854 pKa = 3.92GDD856 pKa = 4.41GFGDD860 pKa = 3.94PNNSISVCEE869 pKa = 4.47AVPPMYY875 pKa = 10.63YY876 pKa = 8.86VTDD879 pKa = 3.67NTDD882 pKa = 3.89CNDD885 pKa = 3.8NDD887 pKa = 3.36NTIYY891 pKa = 10.52PGAPEE896 pKa = 5.08LPDD899 pKa = 5.09GKK901 pKa = 10.73DD902 pKa = 3.2NDD904 pKa = 4.51CDD906 pKa = 4.25GEE908 pKa = 4.32TDD910 pKa = 3.56EE911 pKa = 5.09GTGTTWYY918 pKa = 10.25EE919 pKa = 4.02DD920 pKa = 3.53ADD922 pKa = 3.85GDD924 pKa = 4.64GFGNPDD930 pKa = 2.9VSQIAVSQPEE940 pKa = 4.99GYY942 pKa = 10.35VADD945 pKa = 4.33NTDD948 pKa = 3.7CDD950 pKa = 4.14DD951 pKa = 3.91TKK953 pKa = 11.46LLYY956 pKa = 10.58ADD958 pKa = 4.07NDD960 pKa = 3.75GDD962 pKa = 4.21GFGAGSLVACGVDD975 pKa = 4.05NNSDD979 pKa = 4.01CNDD982 pKa = 3.56NDD984 pKa = 3.32ATIYY988 pKa = 10.44PGAPEE993 pKa = 4.6LCDD996 pKa = 4.68GKK998 pKa = 10.87DD999 pKa = 3.56NNCDD1003 pKa = 3.01GTTDD1007 pKa = 3.74EE1008 pKa = 5.09GCGITTSLRR1017 pKa = 11.84IDD1019 pKa = 3.68GLAMRR1024 pKa = 11.84EE1025 pKa = 4.28GNSGKK1030 pKa = 10.35RR1031 pKa = 11.84NLNFVITLNKK1041 pKa = 9.41KK1042 pKa = 8.93SNVPITVKK1050 pKa = 10.55YY1051 pKa = 8.23RR1052 pKa = 11.84TTDD1055 pKa = 3.11GSATAPADD1063 pKa = 3.42YY1064 pKa = 10.63VAADD1068 pKa = 3.52KK1069 pKa = 10.84TITIPANTRR1078 pKa = 11.84LRR1080 pKa = 11.84TINIAINGDD1089 pKa = 3.16KK1090 pKa = 10.48DD1091 pKa = 3.65YY1092 pKa = 11.44EE1093 pKa = 4.27PNEE1096 pKa = 4.19TVKK1099 pKa = 10.86VEE1101 pKa = 4.83LYY1103 pKa = 10.6DD1104 pKa = 4.06AVNATIAKK1112 pKa = 7.5STAVGYY1118 pKa = 10.15ILNDD1122 pKa = 3.43DD1123 pKa = 4.31RR1124 pKa = 11.84KK1125 pKa = 9.26QSAVNEE1131 pKa = 4.18EE1132 pKa = 3.97PFAAKK1137 pKa = 9.82AASGGKK1143 pKa = 8.09VTLSPNPASNIITLSGISIGKK1164 pKa = 9.02HH1165 pKa = 3.53ITVSDD1170 pKa = 3.19IKK1172 pKa = 10.99GRR1174 pKa = 11.84TLITQISNASQQKK1187 pKa = 10.2INISNLAAGTYY1198 pKa = 8.16IVRR1201 pKa = 11.84YY1202 pKa = 5.05EE1203 pKa = 4.29TEE1205 pKa = 4.34DD1206 pKa = 3.24GSYY1209 pKa = 11.38NSLKK1213 pKa = 10.51FIKK1216 pKa = 10.19QQ1217 pKa = 3.1

Molecular weight: 129.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I5XBR7|A0A1I5XBR7_9BACT N-(5'-phosphoribosyl)anthranilate isomerase OS=Parafilimonas terrae OX=1465490 GN=trpF PE=3 SV=1
MM1 pKa = 7.38KK2 pKa = 9.6RR3 pKa = 11.84TFQPHH8 pKa = 3.73NRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.48SVHH16 pKa = 4.98GFRR19 pKa = 11.84KK20 pKa = 10.11RR21 pKa = 11.84MQTANGRR28 pKa = 11.84KK29 pKa = 8.59VLASRR34 pKa = 11.84RR35 pKa = 11.84TKK37 pKa = 10.38GRR39 pKa = 11.84HH40 pKa = 5.24KK41 pKa = 10.35LTVSDD46 pKa = 3.83EE47 pKa = 4.56RR48 pKa = 11.84KK49 pKa = 10.22LKK51 pKa = 10.73

Molecular weight: 6.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4249

0

4249

1483638

25

3665

349.2

39.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.731 ± 0.032

0.92 ± 0.013

5.431 ± 0.029

5.525 ± 0.039

4.992 ± 0.028

6.578 ± 0.036

1.903 ± 0.017

7.52 ± 0.036

7.244 ± 0.034

9.02 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.299 ± 0.019

6.22 ± 0.04

3.78 ± 0.022

3.738 ± 0.023

3.592 ± 0.023

6.209 ± 0.032

5.687 ± 0.047

6.053 ± 0.028

1.273 ± 0.014

4.283 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski