Amino acid dipepetide frequency for Heterobasidion partitivirus 15

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
10.073AlaAla: 10.073 ± 3.431
0.916AlaCys: 0.916 ± 0.564
8.242AlaAsp: 8.242 ± 0.945
4.579AlaGlu: 4.579 ± 0.412
1.832AlaPhe: 1.832 ± 1.281
5.495AlaGly: 5.495 ± 2.638
1.832AlaHis: 1.832 ± 0.076
0.916AlaIle: 0.916 ± 0.641
0.916AlaLys: 0.916 ± 0.641
5.495AlaLeu: 5.495 ± 2.181
2.747AlaMet: 2.747 ± 0.488
5.495AlaAsn: 5.495 ± 2.638
1.832AlaPro: 1.832 ± 1.129
6.41AlaGln: 6.41 ± 0.869
3.663AlaArg: 3.663 ± 1.053
5.495AlaSer: 5.495 ± 2.638
6.41AlaThr: 6.41 ± 2.074
6.41AlaVal: 6.41 ± 0.869
1.832AlaTrp: 1.832 ± 0.076
3.663AlaTyr: 3.663 ± 0.152
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.916CysGly: 0.916 ± 0.564
0.0CysHis: 0.0 ± 0.0
0.916CysIle: 0.916 ± 0.564
0.0CysLys: 0.0 ± 0.0
1.832CysLeu: 1.832 ± 0.076
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.916CysGln: 0.916 ± 0.564
0.0CysArg: 0.0 ± 0.0
0.916CysSer: 0.916 ± 0.641
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
6.41AspAla: 6.41 ± 2.074
0.0AspCys: 0.0 ± 0.0
3.663AspAsp: 3.663 ± 1.357
2.747AspGlu: 2.747 ± 0.488
3.663AspPhe: 3.663 ± 0.152
4.579AspGly: 4.579 ± 0.412
3.663AspHis: 3.663 ± 2.258
3.663AspIle: 3.663 ± 0.152
0.0AspLys: 0.0 ± 0.0
6.41AspLeu: 6.41 ± 0.336
0.0AspMet: 0.0 ± 0.0
2.747AspAsn: 2.747 ± 0.717
4.579AspPro: 4.579 ± 1.998
1.832AspGln: 1.832 ± 1.281
3.663AspArg: 3.663 ± 1.357
4.579AspSer: 4.579 ± 0.412
0.916AspThr: 0.916 ± 0.641
3.663AspVal: 3.663 ± 0.152
1.832AspTrp: 1.832 ± 1.129
0.916AspTyr: 0.916 ± 0.641
0.0AspXaa: 0.0 ± 0.0
Glu
7.326GluAla: 7.326 ± 0.9
0.916GluCys: 0.916 ± 0.641
1.832GluAsp: 1.832 ± 0.076
2.747GluGlu: 2.747 ± 1.693
1.832GluPhe: 1.832 ± 0.076
0.916GluGly: 0.916 ± 0.564
2.747GluHis: 2.747 ± 0.488
0.916GluIle: 0.916 ± 0.641
2.747GluLys: 2.747 ± 0.717
1.832GluLeu: 1.832 ± 1.129
0.916GluMet: 0.916 ± 0.641
0.916GluAsn: 0.916 ± 0.564
1.832GluPro: 1.832 ± 1.129
0.916GluGln: 0.916 ± 0.641
0.916GluArg: 0.916 ± 0.564
0.916GluSer: 0.916 ± 0.564
4.579GluThr: 4.579 ± 1.617
1.832GluVal: 1.832 ± 1.129
2.747GluTrp: 2.747 ± 0.488
3.663GluTyr: 3.663 ± 0.152
0.0GluXaa: 0.0 ± 0.0
Phe
1.832PheAla: 1.832 ± 1.129
0.0PheCys: 0.0 ± 0.0
5.495PheAsp: 5.495 ± 0.977
4.579PheGlu: 4.579 ± 0.412
6.41PhePhe: 6.41 ± 0.869
2.747PheGly: 2.747 ± 0.717
0.916PheHis: 0.916 ± 0.641
1.832PheIle: 1.832 ± 1.129
1.832PheLys: 1.832 ± 1.129
4.579PheLeu: 4.579 ± 1.617
0.0PheMet: 0.0 ± 0.444
3.663PheAsn: 3.663 ± 0.152
4.579PhePro: 4.579 ± 0.412
2.747PheGln: 2.747 ± 0.488
4.579PheArg: 4.579 ± 1.617
2.747PheSer: 2.747 ± 0.717
6.41PheThr: 6.41 ± 3.279
3.663PheVal: 3.663 ± 1.357
1.832PheTrp: 1.832 ± 0.076
2.747PheTyr: 2.747 ± 1.693
0.0PheXaa: 0.0 ± 0.0
Gly
2.747GlyAla: 2.747 ± 1.922
0.0GlyCys: 0.0 ± 0.0
2.747GlyAsp: 2.747 ± 0.488
0.0GlyGlu: 0.0 ± 0.0
2.747GlyPhe: 2.747 ± 0.488
3.663GlyGly: 3.663 ± 1.357
0.0GlyHis: 0.0 ± 0.0
5.495GlyIle: 5.495 ± 0.228
1.832GlyLys: 1.832 ± 1.281
1.832GlyLeu: 1.832 ± 1.129
2.747GlyMet: 2.747 ± 0.717
3.663GlyAsn: 3.663 ± 1.357
2.747GlyPro: 2.747 ± 0.717
0.0GlyGln: 0.0 ± 0.0
1.832GlyArg: 1.832 ± 0.076
4.579GlySer: 4.579 ± 1.998
0.0GlyThr: 0.0 ± 0.0
1.832GlyVal: 1.832 ± 1.129
0.0GlyTrp: 0.0 ± 0.0
5.495GlyTyr: 5.495 ± 0.977
0.0GlyXaa: 0.0 ± 0.0
His
3.663HisAla: 3.663 ± 0.152
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.916HisGlu: 0.916 ± 0.564
2.747HisPhe: 2.747 ± 1.693
0.916HisGly: 0.916 ± 0.641
2.747HisHis: 2.747 ± 0.488
2.747HisIle: 2.747 ± 0.488
1.832HisLys: 1.832 ± 0.076
2.747HisLeu: 2.747 ± 0.717
0.0HisMet: 0.0 ± 0.0
1.832HisAsn: 1.832 ± 1.129
3.663HisPro: 3.663 ± 1.053
0.916HisGln: 0.916 ± 0.564
2.747HisArg: 2.747 ± 0.488
2.747HisSer: 2.747 ± 0.717
0.916HisThr: 0.916 ± 0.641
4.579HisVal: 4.579 ± 0.412
0.0HisTrp: 0.0 ± 0.0
1.832HisTyr: 1.832 ± 1.129
0.0HisXaa: 0.0 ± 0.0
Ile
2.747IleAla: 2.747 ± 0.488
0.0IleCys: 0.0 ± 0.0
2.747IleAsp: 2.747 ± 0.717
1.832IleGlu: 1.832 ± 1.281
0.916IlePhe: 0.916 ± 0.641
0.916IleGly: 0.916 ± 0.641
0.916IleHis: 0.916 ± 0.564
0.0IleIle: 0.0 ± 0.0
2.747IleLys: 2.747 ± 0.488
4.579IleLeu: 4.579 ± 0.412
3.663IleMet: 3.663 ± 1.357
5.495IleAsn: 5.495 ± 1.433
9.158IlePro: 9.158 ± 0.381
0.916IleGln: 0.916 ± 0.564
4.579IleArg: 4.579 ± 2.822
4.579IleSer: 4.579 ± 0.793
0.916IleThr: 0.916 ± 0.564
1.832IleVal: 1.832 ± 0.076
0.0IleTrp: 0.0 ± 0.0
0.0IleTyr: 0.0 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
7.326LysAla: 7.326 ± 0.9
0.0LysCys: 0.0 ± 0.0
4.579LysAsp: 4.579 ± 1.998
0.916LysGlu: 0.916 ± 0.564
3.663LysPhe: 3.663 ± 1.357
1.832LysGly: 1.832 ± 0.076
0.0LysHis: 0.0 ± 0.0
1.832LysIle: 1.832 ± 1.129
2.747LysLys: 2.747 ± 0.717
4.579LysLeu: 4.579 ± 0.412
1.832LysMet: 1.832 ± 1.019
1.832LysAsn: 1.832 ± 0.076
1.832LysPro: 1.832 ± 0.076
0.916LysGln: 0.916 ± 0.641
2.747LysArg: 2.747 ± 1.693
1.832LysSer: 1.832 ± 0.076
0.916LysThr: 0.916 ± 0.564
0.916LysVal: 0.916 ± 0.641
1.832LysTrp: 1.832 ± 1.129
1.832LysTyr: 1.832 ± 0.076
0.0LysXaa: 0.0 ± 0.0
Leu
6.41LeuAla: 6.41 ± 0.869
0.0LeuCys: 0.0 ± 0.0
9.158LeuAsp: 9.158 ± 1.586
3.663LeuGlu: 3.663 ± 1.053
6.41LeuPhe: 6.41 ± 1.541
4.579LeuGly: 4.579 ± 0.412
5.495LeuHis: 5.495 ± 2.181
5.495LeuIle: 5.495 ± 1.433
3.663LeuLys: 3.663 ± 1.053
9.158LeuLeu: 9.158 ± 2.029
3.663LeuMet: 3.663 ± 1.357
4.579LeuAsn: 4.579 ± 0.793
5.495LeuPro: 5.495 ± 0.977
2.747LeuGln: 2.747 ± 0.488
9.158LeuArg: 9.158 ± 0.381
6.41LeuSer: 6.41 ± 0.336
3.663LeuThr: 3.663 ± 2.258
1.832LeuVal: 1.832 ± 1.281
2.747LeuTrp: 2.747 ± 1.693
3.663LeuTyr: 3.663 ± 2.258
0.0LeuXaa: 0.0 ± 0.0
Met
1.832MetAla: 1.832 ± 0.076
0.0MetCys: 0.0 ± 0.0
2.747MetAsp: 2.747 ± 0.717
1.832MetGlu: 1.832 ± 1.281
1.832MetPhe: 1.832 ± 1.129
1.832MetGly: 1.832 ± 0.076
0.916MetHis: 0.916 ± 0.641
0.916MetIle: 0.916 ± 0.564
0.0MetLys: 0.0 ± 0.0
4.579MetLeu: 4.579 ± 0.793
1.832MetMet: 1.832 ± 1.129
0.0MetAsn: 0.0 ± 0.0
0.916MetPro: 0.916 ± 0.564
0.0MetGln: 0.0 ± 0.0
0.916MetArg: 0.916 ± 0.641
3.663MetSer: 3.663 ± 1.357
0.916MetThr: 0.916 ± 0.564
1.832MetVal: 1.832 ± 0.076
0.0MetTrp: 0.0 ± 0.0
0.916MetTyr: 0.916 ± 0.564
0.0MetXaa: 0.0 ± 0.0
Asn
5.495AsnAla: 5.495 ± 2.638
0.916AsnCys: 0.916 ± 0.641
0.0AsnAsp: 0.0 ± 0.0
1.832AsnGlu: 1.832 ± 1.129
3.663AsnPhe: 3.663 ± 1.357
5.495AsnGly: 5.495 ± 0.228
0.916AsnHis: 0.916 ± 0.641
3.663AsnIle: 3.663 ± 1.357
0.916AsnLys: 0.916 ± 0.641
3.663AsnLeu: 3.663 ± 0.152
1.832AsnMet: 1.832 ± 1.129
3.663AsnAsn: 3.663 ± 1.357
2.747AsnPro: 2.747 ± 0.717
1.832AsnGln: 1.832 ± 0.076
1.832AsnArg: 1.832 ± 1.129
0.916AsnSer: 0.916 ± 0.564
3.663AsnThr: 3.663 ± 0.152
5.495AsnVal: 5.495 ± 0.228
0.916AsnTrp: 0.916 ± 0.564
0.916AsnTyr: 0.916 ± 0.641
0.0AsnXaa: 0.0 ± 0.0
Pro
4.579ProAla: 4.579 ± 0.412
0.0ProCys: 0.0 ± 0.0
5.495ProAsp: 5.495 ± 0.977
4.579ProGlu: 4.579 ± 1.617
2.747ProPhe: 2.747 ± 0.717
1.832ProGly: 1.832 ± 1.281
2.747ProHis: 2.747 ± 0.488
4.579ProIle: 4.579 ± 0.412
1.832ProLys: 1.832 ± 0.076
9.158ProLeu: 9.158 ± 0.381
0.916ProMet: 0.916 ± 0.641
1.832ProAsn: 1.832 ± 1.129
1.832ProPro: 1.832 ± 0.076
1.832ProGln: 1.832 ± 1.129
4.579ProArg: 4.579 ± 0.793
2.747ProSer: 2.747 ± 0.717
7.326ProThr: 7.326 ± 0.305
3.663ProVal: 3.663 ± 1.357
0.0ProTrp: 0.0 ± 0.0
1.832ProTyr: 1.832 ± 0.076
0.0ProXaa: 0.0 ± 0.0
Gln
4.579GlnAla: 4.579 ± 0.412
0.0GlnCys: 0.0 ± 0.0
0.916GlnAsp: 0.916 ± 0.641
0.0GlnGlu: 0.0 ± 0.0
2.747GlnPhe: 2.747 ± 0.488
1.832GlnGly: 1.832 ± 0.076
0.916GlnHis: 0.916 ± 0.564
3.663GlnIle: 3.663 ± 0.152
2.747GlnLys: 2.747 ± 0.717
2.747GlnLeu: 2.747 ± 0.717
0.916GlnMet: 0.916 ± 0.641
0.0GlnAsn: 0.0 ± 0.0
0.916GlnPro: 0.916 ± 0.641
0.916GlnGln: 0.916 ± 0.564
3.663GlnArg: 3.663 ± 1.053
0.916GlnSer: 0.916 ± 0.641
2.747GlnThr: 2.747 ± 0.488
1.832GlnVal: 1.832 ± 0.076
0.0GlnTrp: 0.0 ± 0.0
0.916GlnTyr: 0.916 ± 0.564
0.0GlnXaa: 0.0 ± 0.0
Arg
3.663ArgAla: 3.663 ± 1.357
0.916ArgCys: 0.916 ± 0.564
3.663ArgAsp: 3.663 ± 1.053
3.663ArgGlu: 3.663 ± 1.053
7.326ArgPhe: 7.326 ± 2.105
0.0ArgGly: 0.0 ± 0.0
0.916ArgHis: 0.916 ± 0.564
2.747ArgIle: 2.747 ± 1.922
1.832ArgLys: 1.832 ± 1.129
7.326ArgLeu: 7.326 ± 0.305
2.747ArgMet: 2.747 ± 1.693
0.916ArgAsn: 0.916 ± 0.641
3.663ArgPro: 3.663 ± 1.053
0.916ArgGln: 0.916 ± 0.641
1.832ArgArg: 1.832 ± 1.281
3.663ArgSer: 3.663 ± 1.053
4.579ArgThr: 4.579 ± 1.617
6.41ArgVal: 6.41 ± 1.541
0.0ArgTrp: 0.0 ± 0.0
2.747ArgTyr: 2.747 ± 0.717
0.0ArgXaa: 0.0 ± 0.0
Ser
4.579SerAla: 4.579 ± 0.793
0.0SerCys: 0.0 ± 0.0
0.916SerAsp: 0.916 ± 0.641
2.747SerGlu: 2.747 ± 0.717
3.663SerPhe: 3.663 ± 0.152
2.747SerGly: 2.747 ± 0.488
2.747SerHis: 2.747 ± 0.488
2.747SerIle: 2.747 ± 1.922
5.495SerLys: 5.495 ± 1.433
6.41SerLeu: 6.41 ± 0.869
0.916SerMet: 0.916 ± 0.564
3.663SerAsn: 3.663 ± 1.357
3.663SerPro: 3.663 ± 0.152
2.747SerGln: 2.747 ± 0.717
0.916SerArg: 0.916 ± 0.641
1.832SerSer: 1.832 ± 1.281
6.41SerThr: 6.41 ± 0.336
5.495SerVal: 5.495 ± 1.433
0.0SerTrp: 0.0 ± 0.0
2.747SerTyr: 2.747 ± 0.717
0.0SerXaa: 0.0 ± 0.0
Thr
1.832ThrAla: 1.832 ± 0.076
0.0ThrCys: 0.0 ± 0.0
4.579ThrAsp: 4.579 ± 0.412
1.832ThrGlu: 1.832 ± 0.076
2.747ThrPhe: 2.747 ± 0.488
0.916ThrGly: 0.916 ± 0.641
1.832ThrHis: 1.832 ± 1.281
2.747ThrIle: 2.747 ± 1.693
8.242ThrLys: 8.242 ± 0.26
6.41ThrLeu: 6.41 ± 2.746
0.916ThrMet: 0.916 ± 0.641
2.747ThrAsn: 2.747 ± 0.488
4.579ThrPro: 4.579 ± 0.793
1.832ThrGln: 1.832 ± 0.076
6.41ThrArg: 6.41 ± 0.869
3.663ThrSer: 3.663 ± 1.357
5.495ThrThr: 5.495 ± 0.977
1.832ThrVal: 1.832 ± 0.076
1.832ThrTrp: 1.832 ± 0.076
1.832ThrTyr: 1.832 ± 1.129
0.0ThrXaa: 0.0 ± 0.0
Val
6.41ValAla: 6.41 ± 4.484
1.832ValCys: 1.832 ± 1.129
2.747ValAsp: 2.747 ± 0.717
1.832ValGlu: 1.832 ± 1.129
3.663ValPhe: 3.663 ± 0.152
0.0ValGly: 0.0 ± 0.0
3.663ValHis: 3.663 ± 1.357
1.832ValIle: 1.832 ± 1.129
1.832ValLys: 1.832 ± 1.129
10.073ValLeu: 10.073 ± 1.021
0.916ValMet: 0.916 ± 0.564
3.663ValAsn: 3.663 ± 0.152
1.832ValPro: 1.832 ± 0.076
2.747ValGln: 2.747 ± 0.717
1.832ValArg: 1.832 ± 0.076
3.663ValSer: 3.663 ± 1.357
3.663ValThr: 3.663 ± 0.152
4.579ValVal: 4.579 ± 1.617
0.0ValTrp: 0.0 ± 0.0
2.747ValTyr: 2.747 ± 1.693
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.916TrpGlu: 0.916 ± 0.564
0.0TrpPhe: 0.0 ± 0.0
0.916TrpGly: 0.916 ± 0.564
0.916TrpHis: 0.916 ± 0.564
0.0TrpIle: 0.0 ± 0.0
0.916TrpLys: 0.916 ± 0.641
2.747TrpLeu: 2.747 ± 1.693
0.0TrpMet: 0.0 ± 0.0
1.832TrpAsn: 1.832 ± 1.129
1.832TrpPro: 1.832 ± 0.076
0.0TrpGln: 0.0 ± 0.0
1.832TrpArg: 1.832 ± 1.129
0.916TrpSer: 0.916 ± 0.564
1.832TrpThr: 1.832 ± 0.076
0.916TrpVal: 0.916 ± 0.641
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.747TyrAla: 2.747 ± 0.488
0.0TyrCys: 0.0 ± 0.0
0.0TyrAsp: 0.0 ± 0.0
1.832TyrGlu: 1.832 ± 0.076
5.495TyrPhe: 5.495 ± 2.181
1.832TyrGly: 1.832 ± 0.076
3.663TyrHis: 3.663 ± 1.053
1.832TyrIle: 1.832 ± 0.076
1.832TyrLys: 1.832 ± 1.129
1.832TyrLeu: 1.832 ± 0.076
0.0TyrMet: 0.0 ± 0.0
1.832TyrAsn: 1.832 ± 0.076
6.41TyrPro: 6.41 ± 0.869
1.832TyrGln: 1.832 ± 1.129
1.832TyrArg: 1.832 ± 1.129
3.663TyrSer: 3.663 ± 0.152
0.916TyrThr: 0.916 ± 0.564
0.916TyrVal: 0.916 ± 0.564
0.0TyrTrp: 0.0 ± 0.0
1.832TyrTyr: 1.832 ± 1.129
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1093 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski