Amino acid dipepetide frequency for Tamiami mammarenavirus (isolate Rat/United States/W 10777/1964) (TAMV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
1.783AlaAla: 1.783 ± 0.143
0.892AlaCys: 0.892 ± 0.496
1.783AlaAsp: 1.783 ± 0.143
1.486AlaGlu: 1.486 ± 0.789
0.892AlaPhe: 0.892 ± 0.508
1.189AlaGly: 1.189 ± 0.337
0.892AlaHis: 0.892 ± 0.496
2.972AlaIle: 2.972 ± 1.722
1.783AlaLys: 1.783 ± 0.622
5.646AlaLeu: 5.646 ± 0.577
0.594AlaMet: 0.594 ± 0.483
1.486AlaAsn: 1.486 ± 0.959
0.892AlaPro: 0.892 ± 0.777
0.892AlaGln: 0.892 ± 0.404
0.892AlaArg: 0.892 ± 0.496
2.377AlaSer: 2.377 ± 1.134
1.486AlaThr: 1.486 ± 0.901
2.972AlaVal: 2.972 ± 1.722
0.594AlaTrp: 0.594 ± 0.935
0.892AlaTyr: 0.892 ± 0.508
0.0AlaXaa: 0.0 ± 0.0
Cys
0.892CysAla: 0.892 ± 0.496
0.297CysCys: 0.297 ± 0.169
1.486CysAsp: 1.486 ± 0.196
1.783CysGlu: 1.783 ± 1.387
3.269CysPhe: 3.269 ± 1.294
1.189CysGly: 1.189 ± 1.031
1.189CysHis: 1.189 ± 0.337
0.892CysIle: 0.892 ± 0.404
2.972CysLys: 2.972 ± 1.029
5.052CysLeu: 5.052 ± 1.388
0.594CysMet: 0.594 ± 0.403
1.486CysAsn: 1.486 ± 0.901
0.892CysPro: 0.892 ± 0.431
0.892CysGln: 0.892 ± 0.508
1.486CysArg: 1.486 ± 0.846
1.783CysSer: 1.783 ± 0.875
0.0CysThr: 0.0 ± 0.0
1.486CysVal: 1.486 ± 0.846
0.594CysTrp: 0.594 ± 1.234
1.189CysTyr: 1.189 ± 0.471
0.0CysXaa: 0.0 ± 0.0
Asp
1.783AspAla: 1.783 ± 0.622
2.377AspCys: 2.377 ± 1.014
2.972AspAsp: 2.972 ± 1.332
2.377AspGlu: 2.377 ± 1.014
1.486AspPhe: 1.486 ± 0.196
2.675AspGly: 2.675 ± 1.172
2.972AspHis: 2.972 ± 1.206
3.863AspIle: 3.863 ± 2.157
2.972AspLys: 2.972 ± 0.904
9.51AspLeu: 9.51 ± 3.385
2.08AspMet: 2.08 ± 0.617
1.486AspAsn: 1.486 ± 0.692
3.566AspPro: 3.566 ± 0.834
1.486AspGln: 1.486 ± 0.789
1.783AspArg: 1.783 ± 0.863
4.458AspSer: 4.458 ± 0.595
1.783AspThr: 1.783 ± 1.209
3.863AspVal: 3.863 ± 1.642
1.783AspTrp: 1.783 ± 0.622
3.269AspTyr: 3.269 ± 1.122
0.0AspXaa: 0.0 ± 0.0
Glu
2.675GluAla: 2.675 ± 1.05
2.377GluCys: 2.377 ± 1.354
2.675GluAsp: 2.675 ± 1.172
5.646GluGlu: 5.646 ± 1.531
3.863GluPhe: 3.863 ± 0.821
3.863GluGly: 3.863 ± 0.658
1.783GluHis: 1.783 ± 0.564
4.458GluIle: 4.458 ± 0.533
3.863GluLys: 3.863 ± 0.364
6.241GluLeu: 6.241 ± 1.257
2.377GluMet: 2.377 ± 0.978
2.377GluAsn: 2.377 ± 1.885
1.783GluPro: 1.783 ± 0.564
2.08GluGln: 2.08 ± 1.186
4.16GluArg: 4.16 ± 0.489
5.052GluSer: 5.052 ± 0.677
3.269GluThr: 3.269 ± 0.606
5.052GluVal: 5.052 ± 1.648
0.0GluTrp: 0.0 ± 0.0
2.08GluTyr: 2.08 ± 0.617
0.0GluXaa: 0.0 ± 0.0
Phe
1.189PheAla: 1.189 ± 0.77
1.486PheCys: 1.486 ± 0.901
2.675PheAsp: 2.675 ± 0.847
4.16PheGlu: 4.16 ± 0.574
2.08PhePhe: 2.08 ± 0.857
2.377PheGly: 2.377 ± 1.191
0.892PheHis: 0.892 ± 0.508
2.972PheIle: 2.972 ± 1.692
3.863PheLys: 3.863 ± 1.823
4.16PheLeu: 4.16 ± 0.489
0.297PheMet: 0.297 ± 0.169
2.08PheAsn: 2.08 ± 0.617
0.297PhePro: 0.297 ± 0.169
1.189PheGln: 1.189 ± 0.967
2.377PheArg: 2.377 ± 0.675
4.458PheSer: 4.458 ± 1.873
3.566PheThr: 3.566 ± 1.451
1.783PheVal: 1.783 ± 0.143
1.189PheTrp: 1.189 ± 0.967
1.189PheTyr: 1.189 ± 0.442
0.0PheXaa: 0.0 ± 0.0
Gly
1.189GlyAla: 1.189 ± 0.806
1.783GlyCys: 1.783 ± 0.863
2.377GlyAsp: 2.377 ± 1.061
3.566GlyGlu: 3.566 ± 1.36
1.783GlyPhe: 1.783 ± 0.714
2.972GlyGly: 2.972 ± 1.304
0.892GlyHis: 0.892 ± 0.431
2.972GlyIle: 2.972 ± 1.261
1.189GlyLys: 1.189 ± 0.677
7.132GlyLeu: 7.132 ± 1.242
0.297GlyMet: 0.297 ± 0.169
2.08GlyAsn: 2.08 ± 1.473
1.783GlyPro: 1.783 ± 0.143
1.783GlyGln: 1.783 ± 0.143
2.972GlyArg: 2.972 ± 1.994
5.349GlySer: 5.349 ± 1.144
2.377GlyThr: 2.377 ± 1.014
3.269GlyVal: 3.269 ± 0.704
0.594GlyTrp: 0.594 ± 0.403
1.783GlyTyr: 1.783 ± 0.143
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.594HisCys: 0.594 ± 0.935
1.486HisAsp: 1.486 ± 0.861
1.189HisGlu: 1.189 ± 0.442
0.594HisPhe: 0.594 ± 0.338
1.189HisGly: 1.189 ± 1.175
0.892HisHis: 0.892 ± 1.746
2.675HisIle: 2.675 ± 1.294
1.486HisLys: 1.486 ± 0.581
2.377HisLeu: 2.377 ± 1.32
0.892HisMet: 0.892 ± 0.431
0.892HisAsn: 0.892 ± 0.508
0.594HisPro: 0.594 ± 0.338
0.297HisGln: 0.297 ± 0.169
1.189HisArg: 1.189 ± 0.967
2.675HisSer: 2.675 ± 0.427
1.189HisThr: 1.189 ± 0.967
1.486HisVal: 1.486 ± 0.846
0.594HisTrp: 0.594 ± 0.483
0.892HisTyr: 0.892 ± 0.777
0.0HisXaa: 0.0 ± 0.0
Ile
2.675IleAla: 2.675 ± 2.466
1.189IleCys: 1.189 ± 1.639
1.783IleAsp: 1.783 ± 0.714
6.538IleGlu: 6.538 ± 1.894
0.594IlePhe: 0.594 ± 0.483
2.377IleGly: 2.377 ± 0.884
1.486IleHis: 1.486 ± 0.196
3.863IleIle: 3.863 ± 1.425
5.646IleLys: 5.646 ± 2.269
7.429IleLeu: 7.429 ± 2.149
2.972IleMet: 2.972 ± 1.332
4.458IleAsn: 4.458 ± 0.595
1.783IlePro: 1.783 ± 2.063
1.189IleGln: 1.189 ± 0.337
2.08IleArg: 2.08 ± 0.831
5.944IleSer: 5.944 ± 0.718
3.863IleThr: 3.863 ± 0.609
2.377IleVal: 2.377 ± 0.413
0.892IleTrp: 0.892 ± 0.856
2.08IleTyr: 2.08 ± 0.861
0.0IleXaa: 0.0 ± 0.0
Lys
1.189LysAla: 1.189 ± 0.834
2.377LysCys: 2.377 ± 1.241
5.646LysAsp: 5.646 ± 1.76
5.349LysGlu: 5.349 ± 1.075
3.863LysPhe: 3.863 ± 1.224
4.16LysGly: 4.16 ± 0.762
1.189LysHis: 1.189 ± 0.806
4.16LysIle: 4.16 ± 1.049
3.269LysLys: 3.269 ± 0.614
9.807LysLeu: 9.807 ± 3.11
0.892LysMet: 0.892 ± 0.508
2.675LysAsn: 2.675 ± 1.771
2.377LysPro: 2.377 ± 1.479
0.892LysGln: 0.892 ± 0.431
4.458LysArg: 4.458 ± 0.764
7.132LysSer: 7.132 ± 0.908
4.755LysThr: 4.755 ± 1.095
4.16LysVal: 4.16 ± 1.992
1.189LysTrp: 1.189 ± 0.967
1.783LysTyr: 1.783 ± 0.809
0.0LysXaa: 0.0 ± 0.0
Leu
2.972LeuAla: 2.972 ± 0.52
5.052LeuCys: 5.052 ± 0.951
8.618LeuAsp: 8.618 ± 4.144
5.944LeuGlu: 5.944 ± 1.039
3.863LeuPhe: 3.863 ± 1.341
2.675LeuGly: 2.675 ± 1.172
2.675LeuHis: 2.675 ± 0.942
9.51LeuIle: 9.51 ± 3.372
9.807LeuLys: 9.807 ± 1.868
11.59LeuLeu: 11.59 ± 2.051
2.972LeuMet: 2.972 ± 1.544
8.915LeuAsn: 8.915 ± 2.683
3.566LeuPro: 3.566 ± 0.771
3.863LeuGln: 3.863 ± 0.821
6.241LeuArg: 6.241 ± 1.168
14.859LeuSer: 14.859 ± 2.51
8.321LeuThr: 8.321 ± 1.831
6.835LeuVal: 6.835 ± 1.277
0.594LeuTrp: 0.594 ± 0.338
3.269LeuTyr: 3.269 ± 0.606
0.0LeuXaa: 0.0 ± 0.0
Met
1.486MetAla: 1.486 ± 0.692
0.892MetCys: 0.892 ± 0.508
2.08MetAsp: 2.08 ± 0.245
1.486MetGlu: 1.486 ± 0.581
1.189MetPhe: 1.189 ± 1.393
1.486MetGly: 1.486 ± 0.959
0.297MetHis: 0.297 ± 0.467
0.892MetIle: 0.892 ± 0.508
0.892MetLys: 0.892 ± 0.431
2.972MetLeu: 2.972 ± 1.545
0.594MetMet: 0.594 ± 0.403
0.892MetAsn: 0.892 ± 0.508
0.594MetPro: 0.594 ± 1.234
0.892MetGln: 0.892 ± 0.431
1.486MetArg: 1.486 ± 0.789
3.269MetSer: 3.269 ± 0.889
2.08MetThr: 2.08 ± 0.861
0.594MetVal: 0.594 ± 0.403
0.0MetTrp: 0.0 ± 0.0
0.297MetTyr: 0.297 ± 0.169
0.0MetXaa: 0.0 ± 0.0
Asn
2.08AsnAla: 2.08 ± 0.617
0.892AsnCys: 0.892 ± 0.777
4.16AsnAsp: 4.16 ± 1.666
2.675AsnGlu: 2.675 ± 1.05
1.783AsnPhe: 1.783 ± 0.622
1.189AsnGly: 1.189 ± 0.337
2.08AsnHis: 2.08 ± 2.551
1.783AsnIle: 1.783 ± 2.136
4.16AsnLys: 4.16 ± 0.574
5.944AsnLeu: 5.944 ± 0.785
2.08AsnMet: 2.08 ± 0.54
1.189AsnAsn: 1.189 ± 0.442
1.189AsnPro: 1.189 ± 0.337
1.486AsnGln: 1.486 ± 0.581
3.566AsnArg: 3.566 ± 1.36
4.16AsnSer: 4.16 ± 1.714
1.783AsnThr: 1.783 ± 0.143
1.189AsnVal: 1.189 ± 0.442
0.892AsnTrp: 0.892 ± 0.508
1.486AsnTyr: 1.486 ± 0.901
0.0AsnXaa: 0.0 ± 0.0
Pro
0.892ProAla: 0.892 ± 0.856
0.594ProCys: 0.594 ± 0.338
3.566ProAsp: 3.566 ± 0.287
1.486ProGlu: 1.486 ± 1.316
1.783ProPhe: 1.783 ± 1.431
2.08ProGly: 2.08 ± 0.464
0.594ProHis: 0.594 ± 0.483
1.486ProIle: 1.486 ± 0.749
2.377ProLys: 2.377 ± 0.693
3.863ProLeu: 3.863 ± 0.821
0.297ProMet: 0.297 ± 0.694
2.08ProAsn: 2.08 ± 1.186
1.189ProPro: 1.189 ± 1.175
0.892ProGln: 0.892 ± 0.777
1.486ProArg: 1.486 ± 0.692
2.675ProSer: 2.675 ± 0.427
2.08ProThr: 2.08 ± 1.899
2.675ProVal: 2.675 ± 1.586
0.0ProTrp: 0.0 ± 0.0
1.783ProTyr: 1.783 ± 0.982
0.0ProXaa: 0.0 ± 0.0
Gln
0.297GlnAla: 0.297 ± 0.582
0.892GlnCys: 0.892 ± 0.431
1.189GlnAsp: 1.189 ± 0.471
2.08GlnGlu: 2.08 ± 0.245
1.486GlnPhe: 1.486 ± 0.581
2.675GlnGly: 2.675 ± 0.847
0.0GlnHis: 0.0 ± 0.0
3.269GlnIle: 3.269 ± 0.704
2.08GlnLys: 2.08 ± 0.245
4.458GlnLeu: 4.458 ± 1.806
0.892GlnMet: 0.892 ± 0.508
0.892GlnAsn: 0.892 ± 0.431
0.594GlnPro: 0.594 ± 0.935
0.892GlnGln: 0.892 ± 0.496
1.783GlnArg: 1.783 ± 1.712
3.863GlnSer: 3.863 ± 1.976
0.594GlnThr: 0.594 ± 1.784
1.783GlnVal: 1.783 ± 0.622
0.0GlnTrp: 0.0 ± 0.0
1.486GlnTyr: 1.486 ± 0.846
0.0GlnXaa: 0.0 ± 0.0
Arg
2.675ArgAla: 2.675 ± 0.983
1.486ArgCys: 1.486 ± 0.959
2.972ArgAsp: 2.972 ± 0.904
3.863ArgGlu: 3.863 ± 0.896
2.08ArgPhe: 2.08 ± 0.245
1.486ArgGly: 1.486 ± 0.692
1.783ArgHis: 1.783 ± 1.418
2.972ArgIle: 2.972 ± 0.951
2.675ArgLys: 2.675 ± 0.427
5.944ArgLeu: 5.944 ± 0.955
1.486ArgMet: 1.486 ± 0.692
2.972ArgAsn: 2.972 ± 0.393
2.675ArgPro: 2.675 ± 0.427
1.783ArgGln: 1.783 ± 0.143
3.269ArgArg: 3.269 ± 2.386
6.241ArgSer: 6.241 ± 1.393
2.08ArgThr: 2.08 ± 0.897
2.377ArgVal: 2.377 ± 0.536
0.892ArgTrp: 0.892 ± 0.404
1.486ArgTyr: 1.486 ± 1.588
0.0ArgXaa: 0.0 ± 0.0
Ser
2.675SerAla: 2.675 ± 0.525
2.675SerCys: 2.675 ± 0.77
4.755SerAsp: 4.755 ± 0.621
7.727SerGlu: 7.727 ± 1.132
5.349SerPhe: 5.349 ± 0.848
6.538SerGly: 6.538 ± 1.586
1.486SerHis: 1.486 ± 0.846
3.566SerIle: 3.566 ± 1.491
8.618SerLys: 8.618 ± 2.144
11.887SerLeu: 11.887 ± 1.691
2.377SerMet: 2.377 ± 0.787
4.16SerAsn: 4.16 ± 1.329
2.972SerPro: 2.972 ± 1.162
2.972SerGln: 2.972 ± 1.327
5.349SerArg: 5.349 ± 1.114
10.104SerSer: 10.104 ± 2.796
4.458SerThr: 4.458 ± 0.589
5.944SerVal: 5.944 ± 1.644
0.892SerTrp: 0.892 ± 0.508
2.675SerTyr: 2.675 ± 1.05
0.0SerXaa: 0.0 ± 0.0
Thr
2.377ThrAla: 2.377 ± 1.345
0.594ThrCys: 0.594 ± 0.483
2.08ThrAsp: 2.08 ± 0.952
1.783ThrGlu: 1.783 ± 1.015
2.08ThrPhe: 2.08 ± 0.736
1.486ThrGly: 1.486 ± 0.512
0.892ThrHis: 0.892 ± 0.431
3.269ThrIle: 3.269 ± 0.704
4.16ThrLys: 4.16 ± 1.45
7.132ThrLeu: 7.132 ± 0.738
0.594ThrMet: 0.594 ± 1.009
2.377ThrAsn: 2.377 ± 0.942
2.675ThrPro: 2.675 ± 2.785
2.972ThrGln: 2.972 ± 1.069
2.972ThrArg: 2.972 ± 0.501
4.458ThrSer: 4.458 ± 1.622
5.052ThrThr: 5.052 ± 3.034
2.675ThrVal: 2.675 ± 0.427
2.08ThrTrp: 2.08 ± 1.816
1.486ThrTyr: 1.486 ± 0.901
0.0ThrXaa: 0.0 ± 0.0
Val
2.675ValAla: 2.675 ± 0.525
1.189ValCys: 1.189 ± 0.442
3.863ValAsp: 3.863 ± 1.019
3.863ValGlu: 3.863 ± 0.877
2.377ValPhe: 2.377 ± 0.942
4.458ValGly: 4.458 ± 0.492
0.892ValHis: 0.892 ± 0.404
2.972ValIle: 2.972 ± 1.261
5.944ValLys: 5.944 ± 1.208
5.646ValLeu: 5.646 ± 1.738
0.297ValMet: 0.297 ± 0.582
2.675ValAsn: 2.675 ± 0.942
3.863ValPro: 3.863 ± 1.573
2.675ValGln: 2.675 ± 0.847
3.269ValArg: 3.269 ± 1.592
4.755ValSer: 4.755 ± 1.262
1.486ValThr: 1.486 ± 0.692
4.458ValVal: 4.458 ± 0.492
0.297ValTrp: 0.297 ± 0.582
1.486ValTyr: 1.486 ± 0.581
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.892TrpAsp: 0.892 ± 0.856
0.297TrpGlu: 0.297 ± 0.169
0.297TrpPhe: 0.297 ± 0.892
0.594TrpGly: 0.594 ± 0.483
0.297TrpHis: 0.297 ± 0.169
0.594TrpIle: 0.594 ± 0.403
0.892TrpLys: 0.892 ± 0.496
2.972TrpLeu: 2.972 ± 1.283
0.297TrpMet: 0.297 ± 0.582
0.0TrpAsn: 0.0 ± 0.0
0.594TrpPro: 0.594 ± 0.403
0.0TrpGln: 0.0 ± 0.0
0.297TrpArg: 0.297 ± 0.467
1.486TrpSer: 1.486 ± 1.537
0.297TrpThr: 0.297 ± 0.467
2.377TrpVal: 2.377 ± 0.413
0.0TrpTrp: 0.0 ± 0.0
0.892TrpTyr: 0.892 ± 0.431
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.892TyrAla: 0.892 ± 0.508
1.783TyrCys: 1.783 ± 2.272
1.486TyrAsp: 1.486 ± 0.846
2.377TyrGlu: 2.377 ± 0.396
3.566TyrPhe: 3.566 ± 1.056
1.486TyrGly: 1.486 ± 0.8
0.0TyrHis: 0.0 ± 0.0
2.08TyrIle: 2.08 ± 0.917
2.675TyrLys: 2.675 ± 0.5
2.675TyrLeu: 2.675 ± 1.05
1.189TyrMet: 1.189 ± 0.677
0.594TyrAsn: 0.594 ± 0.819
0.0TyrPro: 0.0 ± 0.0
2.08TyrGln: 2.08 ± 1.186
2.08TyrArg: 2.08 ± 0.861
2.08TyrSer: 2.08 ± 0.952
2.675TyrThr: 2.675 ± 1.719
1.783TyrVal: 1.783 ± 0.622
0.0TyrTrp: 0.0 ± 0.0
1.189TyrTyr: 1.189 ± 0.677
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (3366 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski