Mycoplasma caviae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasmopsis

Average proteome isoelectric point is 7.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1008 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3P8L7L7|A0A3P8L7L7_9MOLU 30S ribosomal protein S10 OS=Mycoplasma caviae OX=55603 GN=rpsJ PE=3 SV=1
MM1 pKa = 7.02SWKK4 pKa = 9.37TKK6 pKa = 10.08ILVVSDD12 pKa = 2.73IHH14 pKa = 7.83GDD16 pKa = 3.61LSTLSAIVSVEE27 pKa = 3.8MPDD30 pKa = 4.06YY31 pKa = 10.76IISCGDD37 pKa = 3.17NLLPKK42 pKa = 10.46SFMQEE47 pKa = 3.48MFSYY51 pKa = 10.86YY52 pKa = 10.42VDD54 pKa = 3.76GNNDD58 pKa = 3.28EE59 pKa = 4.82LDD61 pKa = 3.46EE62 pKa = 4.38EE63 pKa = 5.2FYY65 pKa = 11.5SRR67 pKa = 11.84IPSARR72 pKa = 11.84FEE74 pKa = 4.11IDD76 pKa = 3.2GLCFYY81 pKa = 10.94VEE83 pKa = 4.49HH84 pKa = 6.32GHH86 pKa = 6.64NLGNYY91 pKa = 7.89EE92 pKa = 5.06LLRR95 pKa = 11.84DD96 pKa = 3.9PKK98 pKa = 10.59KK99 pKa = 11.04VYY101 pKa = 10.93LDD103 pKa = 3.99FDD105 pKa = 3.77TLAIKK110 pKa = 9.4TYY112 pKa = 10.89

Molecular weight: 12.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P8MEG6|A0A3P8MEG6_9MOLU Protein of uncharacterized function (DUF402) OS=Mycoplasma caviae OX=55603 GN=NCTC10126_00175 PE=4 SV=1
MM1 pKa = 7.52ARR3 pKa = 11.84ILNIEE8 pKa = 3.76IPNNKK13 pKa = 9.0RR14 pKa = 11.84VVISLTYY21 pKa = 9.52IYY23 pKa = 10.74GIGRR27 pKa = 11.84TRR29 pKa = 11.84AQEE32 pKa = 3.49ICAKK36 pKa = 10.7AKK38 pKa = 10.17INEE41 pKa = 4.01NLRR44 pKa = 11.84VKK46 pKa = 10.53DD47 pKa = 3.86LSEE50 pKa = 4.18EE51 pKa = 3.84QLSAIRR57 pKa = 11.84EE58 pKa = 4.1VAKK61 pKa = 10.51EE62 pKa = 3.8YY63 pKa = 8.2TTEE66 pKa = 4.02GDD68 pKa = 3.5LRR70 pKa = 11.84RR71 pKa = 11.84EE72 pKa = 3.51TSLNIKK78 pKa = 10.06RR79 pKa = 11.84LMEE82 pKa = 4.08IKK84 pKa = 9.93CYY86 pKa = 10.25RR87 pKa = 11.84GIRR90 pKa = 11.84HH91 pKa = 6.31RR92 pKa = 11.84KK93 pKa = 7.28GLPVRR98 pKa = 11.84GQCTQKK104 pKa = 10.57NARR107 pKa = 11.84TRR109 pKa = 11.84KK110 pKa = 9.32GPRR113 pKa = 11.84KK114 pKa = 7.39TVAGKK119 pKa = 10.2KK120 pKa = 10.08SKK122 pKa = 10.84

Molecular weight: 14.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1008

0

1008

344285

30

3316

341.6

39.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.045 ± 0.085

0.686 ± 0.022

5.524 ± 0.055

6.915 ± 0.075

5.38 ± 0.058

4.564 ± 0.073

1.473 ± 0.024

9.189 ± 0.083

10.877 ± 0.075

9.356 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.866 ± 0.03

7.796 ± 0.091

2.484 ± 0.044

3.022 ± 0.036

3.134 ± 0.045

6.901 ± 0.059

4.955 ± 0.053

5.433 ± 0.046

0.981 ± 0.022

4.417 ± 0.043
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski