Natronomonas salsuginis

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Natronomonas

Average proteome isoelectric point is 4.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2818 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V5ZPF7|A0A4V5ZPF7_9EURY Vitamin B12-dependent ribonucleotide reductase OS=Natronomonas salsuginis OX=2217661 GN=DM868_00080 PE=3 SV=1
MM1 pKa = 7.4GLDD4 pKa = 4.06EE5 pKa = 6.05LSDD8 pKa = 5.63DD9 pKa = 4.76IDD11 pKa = 3.3ATYY14 pKa = 11.53ADD16 pKa = 4.59LGEE19 pKa = 4.43EE20 pKa = 4.24LSVALDD26 pKa = 3.49TEE28 pKa = 4.65TRR30 pKa = 11.84NEE32 pKa = 3.83LAMLEE37 pKa = 4.36SVYY40 pKa = 11.16DD41 pKa = 3.8PDD43 pKa = 3.75EE44 pKa = 4.08TDD46 pKa = 3.12EE47 pKa = 4.08LVRR50 pKa = 11.84RR51 pKa = 11.84AIHH54 pKa = 6.04MLFQTAVDD62 pKa = 3.55TGNLDD67 pKa = 3.1FHH69 pKa = 6.97LRR71 pKa = 11.84SGYY74 pKa = 10.69DD75 pKa = 3.15VTYY78 pKa = 10.86DD79 pKa = 3.54EE80 pKa = 5.33YY81 pKa = 11.78LMGMTMDD88 pKa = 4.75TYY90 pKa = 11.43NEE92 pKa = 4.04QPQQQQYY99 pKa = 9.9PPQDD103 pKa = 3.55DD104 pKa = 3.4NARR107 pKa = 11.84RR108 pKa = 11.84YY109 pKa = 8.28QFF111 pKa = 3.67

Molecular weight: 12.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V5ZND3|A0A4V5ZND3_9EURY ATP-synt_C domain-containing protein OS=Natronomonas salsuginis OX=2217661 GN=DM868_12805 PE=4 SV=1
MM1 pKa = 7.5EE2 pKa = 4.17MPRR5 pKa = 11.84RR6 pKa = 11.84FNTYY10 pKa = 9.29CPHH13 pKa = 6.64CHH15 pKa = 5.33THH17 pKa = 5.89HH18 pKa = 5.09QHH20 pKa = 5.32EE21 pKa = 4.65VEE23 pKa = 4.23KK24 pKa = 10.74VRR26 pKa = 11.84SGRR29 pKa = 11.84SSGTKK34 pKa = 8.02WDD36 pKa = 3.19ARR38 pKa = 11.84RR39 pKa = 11.84TRR41 pKa = 11.84RR42 pKa = 11.84GKK44 pKa = 10.51AVIGNAGRR52 pKa = 11.84FSKK55 pKa = 11.05VPGGDD60 pKa = 3.29KK61 pKa = 9.11PTKK64 pKa = 9.73KK65 pKa = 8.97TDD67 pKa = 3.09LKK69 pKa = 10.75YY70 pKa = 10.63RR71 pKa = 11.84CSEE74 pKa = 3.99CGKK77 pKa = 10.02AHH79 pKa = 7.52LRR81 pKa = 11.84QGWRR85 pKa = 11.84AGRR88 pKa = 11.84LIFQEE93 pKa = 4.13

Molecular weight: 10.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2818

0

2818

826435

30

9006

293.3

31.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.711 ± 0.061

0.739 ± 0.014

8.143 ± 0.056

8.573 ± 0.079

3.354 ± 0.033

8.697 ± 0.082

1.999 ± 0.024

4.756 ± 0.04

1.971 ± 0.031

8.777 ± 0.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.797 ± 0.022

2.437 ± 0.039

4.576 ± 0.031

2.256 ± 0.025

6.727 ± 0.054

5.589 ± 0.06

6.389 ± 0.073

8.768 ± 0.046

1.036 ± 0.016

2.705 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski