Wuhan house centipede virus 1

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 7.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KKG1|A0A1L3KKG1_9VIRU Non-structural protein 3 OS=Wuhan house centipede virus 1 OX=1923705 PE=4 SV=1
MM1 pKa = 7.32YY2 pKa = 10.36IKK4 pKa = 10.56FCVLLYY10 pKa = 9.95FVSFVNSAQLYY21 pKa = 9.49SRR23 pKa = 11.84WLEE26 pKa = 3.61NGYY29 pKa = 10.47FGTNITLPLLSLKK42 pKa = 9.31YY43 pKa = 9.08TEE45 pKa = 4.76TPVGQYY51 pKa = 10.15SRR53 pKa = 11.84SPFVFEE59 pKa = 4.44KK60 pKa = 10.82SCISVVKK67 pKa = 9.99TNTLLEE73 pKa = 4.24VDD75 pKa = 4.16CQLPQHH81 pKa = 6.53CGVLHH86 pKa = 6.03HH87 pKa = 7.16RR88 pKa = 11.84KK89 pKa = 8.24MPQGWFGQEE98 pKa = 3.85VILCYY103 pKa = 10.45SFHH106 pKa = 5.66QTTLGGALKK115 pKa = 10.55VSTMDD120 pKa = 3.79FSPSSFTYY128 pKa = 9.85EE129 pKa = 4.25SPNGPLTVEE138 pKa = 4.47DD139 pKa = 3.72WTSVDD144 pKa = 4.29FFSHH148 pKa = 6.9VYY150 pKa = 10.4LLNSNDD156 pKa = 3.81RR157 pKa = 11.84YY158 pKa = 11.2SLIPRR163 pKa = 11.84ICLDD167 pKa = 4.12HH168 pKa = 5.96YY169 pKa = 10.01TSSNDD174 pKa = 3.58DD175 pKa = 3.41QPQSVQFEE183 pKa = 4.29FTEE186 pKa = 4.34SQVCVHH192 pKa = 6.06QSLHH196 pKa = 6.84PEE198 pKa = 4.14TDD200 pKa = 4.73CEE202 pKa = 4.4PEE204 pKa = 3.87WYY206 pKa = 10.1EE207 pKa = 4.61SMEE210 pKa = 4.07KK211 pKa = 10.7LIVSYY216 pKa = 9.84DD217 pKa = 3.41YY218 pKa = 11.0PVAYY222 pKa = 10.09RR223 pKa = 11.84GNPYY227 pKa = 10.68EE228 pKa = 4.25LVTHH232 pKa = 6.48IRR234 pKa = 11.84YY235 pKa = 9.67GNQDD239 pKa = 3.72PNVINYY245 pKa = 8.73VSSNKK250 pKa = 9.59LNHH253 pKa = 5.72VFSVIDD259 pKa = 3.71GKK261 pKa = 9.46TYY263 pKa = 10.7SSAVGLSHH271 pKa = 7.08MYY273 pKa = 10.51LHH275 pKa = 7.42GISSPEE281 pKa = 3.81NYY283 pKa = 9.13IVLVDD288 pKa = 4.14PSPLKK293 pKa = 10.86VNQSFCYY300 pKa = 9.79PIQSVYY306 pKa = 10.88KK307 pKa = 9.13NPLSAVINSIIDD319 pKa = 3.39ALEE322 pKa = 4.4PIILKK327 pKa = 10.18LLSILEE333 pKa = 4.07QYY335 pKa = 10.57LEE337 pKa = 4.19KK338 pKa = 10.4FLKK341 pKa = 10.45IFIKK345 pKa = 10.76ALLIFLKK352 pKa = 10.61LFYY355 pKa = 10.77EE356 pKa = 5.33LIDD359 pKa = 3.68NLLTQEE365 pKa = 4.9IITALLCSAAVYY377 pKa = 9.92LYY379 pKa = 10.64FKK381 pKa = 10.44DD382 pKa = 3.95YY383 pKa = 11.14VITFISFCLFCFLLYY398 pKa = 10.85YY399 pKa = 10.22IFF401 pKa = 5.33

Molecular weight: 46.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KKD7|A0A1L3KKD7_9VIRU DiSB-ORF2_chro domain-containing protein OS=Wuhan house centipede virus 1 OX=1923705 PE=4 SV=1
MM1 pKa = 7.39SSAVRR6 pKa = 11.84NRR8 pKa = 11.84SRR10 pKa = 11.84IPVVSQRR17 pKa = 11.84TVQRR21 pKa = 11.84PRR23 pKa = 11.84VVTRR27 pKa = 11.84TRR29 pKa = 11.84VVVPRR34 pKa = 11.84QKK36 pKa = 9.46TRR38 pKa = 11.84NTPRR42 pKa = 11.84SNYY45 pKa = 9.49FDD47 pKa = 4.14LNKK50 pKa = 9.82VFTDD54 pKa = 3.59ISSTFTRR61 pKa = 11.84ALSNPLVLCTISIALGVILTHH82 pKa = 7.55DD83 pKa = 3.94FEE85 pKa = 5.25KK86 pKa = 11.06KK87 pKa = 9.94NGYY90 pKa = 9.84IYY92 pKa = 9.59DD93 pKa = 3.91TFKK96 pKa = 11.05EE97 pKa = 4.19RR98 pKa = 11.84NDD100 pKa = 4.84NISQWIVNNGKK111 pKa = 9.59KK112 pKa = 9.93FAGLLIFAPAVVDD125 pKa = 4.03APRR128 pKa = 11.84NLRR131 pKa = 11.84AVVALVSFLWVMIIPEE147 pKa = 4.31SKK149 pKa = 9.13AAEE152 pKa = 4.1YY153 pKa = 10.19FLQSLALHH161 pKa = 6.44TYY163 pKa = 9.85FRR165 pKa = 11.84LSNNNSKK172 pKa = 10.8LMVLFMVVIAWFLGFLTVGKK192 pKa = 10.22NSSS195 pKa = 3.04

Molecular weight: 22.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

3135

166

2373

783.8

89.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.402 ± 0.54

2.711 ± 0.363

5.04 ± 0.682

5.71 ± 1.092

5.423 ± 0.605

3.7 ± 0.211

2.679 ± 0.256

6.252 ± 0.234

5.391 ± 0.552

9.601 ± 0.884

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.978 ± 0.285

5.837 ± 0.582

4.402 ± 0.265

3.126 ± 0.307

5.136 ± 0.898

8.995 ± 0.459

5.678 ± 0.203

7.719 ± 0.729

0.574 ± 0.396

5.646 ± 0.586
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski