Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1)

Taxonomy: cellular organisms; Bacteria; Deferribacteres; Deferribacteres; Deferribacterales; Deferribacteraceae; Calditerrivibrio; Calditerrivibrio nitroreducens

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2089 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E4TJG6|E4TJG6_CALNY Enoyl-CoA hydratase/isomerase OS=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) OX=768670 GN=Calni_1325 PE=4 SV=1
MM1 pKa = 7.55EE2 pKa = 6.11PSFCPYY8 pKa = 10.17CGEE11 pKa = 4.02EE12 pKa = 4.78HH13 pKa = 7.3LDD15 pKa = 3.62EE16 pKa = 5.63LDD18 pKa = 3.55PTEE21 pKa = 5.94LMVDD25 pKa = 3.39NQKK28 pKa = 10.52WIIYY32 pKa = 9.49HH33 pKa = 5.44YY34 pKa = 8.35EE35 pKa = 4.01CKK37 pKa = 10.56VCGEE41 pKa = 4.46IFDD44 pKa = 5.02KK45 pKa = 10.82IYY47 pKa = 10.4IDD49 pKa = 3.78EE50 pKa = 4.95EE51 pKa = 4.47YY52 pKa = 11.29GDD54 pKa = 4.3MEE56 pKa = 6.61DD57 pKa = 6.47DD58 pKa = 3.79EE59 pKa = 7.14DD60 pKa = 5.59DD61 pKa = 4.82EE62 pKa = 4.6NRR64 pKa = 11.84LWSS67 pKa = 3.62

Molecular weight: 8.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E4TI08|E4TI08_CALNY Putative membrane protein insertion efficiency factor OS=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) OX=768670 GN=Calni_1027 PE=3 SV=1
MM1 pKa = 7.24AQMRR5 pKa = 11.84TLKK8 pKa = 10.79KK9 pKa = 9.15LTKK12 pKa = 9.5LKK14 pKa = 10.39KK15 pKa = 9.98IRR17 pKa = 11.84DD18 pKa = 3.38HH19 pKa = 6.51GFRR22 pKa = 11.84ARR24 pKa = 11.84KK25 pKa = 6.71STKK28 pKa = 9.74GGRR31 pKa = 11.84NVLKK35 pKa = 10.44RR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84AKK40 pKa = 9.91GRR42 pKa = 11.84KK43 pKa = 8.85RR44 pKa = 11.84LALL47 pKa = 3.85

Molecular weight: 5.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2089

0

2089

683502

32

1706

327.2

37.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.549 ± 0.059

0.927 ± 0.024

5.855 ± 0.04

6.915 ± 0.047

5.388 ± 0.05

6.342 ± 0.056

1.48 ± 0.021

9.783 ± 0.061

9.033 ± 0.049

9.524 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.347 ± 0.024

5.386 ± 0.053

3.218 ± 0.03

2.237 ± 0.021

3.766 ± 0.031

6.155 ± 0.037

4.6 ± 0.035

6.584 ± 0.044

0.659 ± 0.016

4.251 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski