Enterobacteria phage YYZ-2008

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pankowvirus; Enterobacteria virus YYZ2008

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 75 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B6DZ68|B6DZ68_9CAUD N protein OS=Enterobacteria phage YYZ-2008 OX=564886 PE=4 SV=1
MM1 pKa = 7.62EE2 pKa = 4.36FHH4 pKa = 7.21EE5 pKa = 5.34SAICDD10 pKa = 3.52FRR12 pKa = 11.84ANANSVKK19 pKa = 9.25PQPIAVLFKK28 pKa = 10.94TMGAWAVLCFAADD41 pKa = 3.76DD42 pKa = 4.28TDD44 pKa = 3.9DD45 pKa = 3.38TDD47 pKa = 3.53ARR49 pKa = 11.84MAIGQEE55 pKa = 4.02MEE57 pKa = 3.99MDD59 pKa = 3.55PTNDD63 pKa = 2.86EE64 pKa = 4.58FIIYY68 pKa = 7.71GAPSNYY74 pKa = 10.43LLDD77 pKa = 3.47TCNIYY82 pKa = 10.99NKK84 pKa = 10.37AAA86 pKa = 3.64

Molecular weight: 9.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B6DZ96|B6DZ96_9CAUD Putative DNAse OS=Enterobacteria phage YYZ-2008 OX=564886 PE=4 SV=1
MM1 pKa = 7.39SSKK4 pKa = 10.2NRR6 pKa = 11.84PRR8 pKa = 11.84RR9 pKa = 11.84TTTRR13 pKa = 11.84NIRR16 pKa = 11.84FPNQMIEE23 pKa = 4.22QINIALDD30 pKa = 3.51QKK32 pKa = 11.1GSEE35 pKa = 4.26NFSAWVIEE43 pKa = 4.17SCRR46 pKa = 11.84RR47 pKa = 11.84EE48 pKa = 3.64LAADD52 pKa = 3.66IKK54 pKa = 10.46YY55 pKa = 10.59ARR57 pKa = 11.84QLTIKK62 pKa = 10.78KK63 pKa = 10.17NDD65 pKa = 3.18TQYY68 pKa = 11.67ALRR71 pKa = 11.84WLFII75 pKa = 4.33

Molecular weight: 8.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

75

0

75

15830

44

1159

211.1

23.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.431 ± 0.501

1.51 ± 0.163

5.515 ± 0.259

6.431 ± 0.292

3.316 ± 0.154

7.239 ± 0.256

1.92 ± 0.158

5.439 ± 0.242

5.199 ± 0.31

8.168 ± 0.296

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.931 ± 0.167

4.239 ± 0.202

4.163 ± 0.278

4.39 ± 0.266

6.759 ± 0.312

6.702 ± 0.274

5.875 ± 0.353

6.519 ± 0.249

1.567 ± 0.127

2.634 ± 0.126
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski