Veillonella sp. AS16

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Negativicutes; Veillonellales; Veillonellaceae; Veillonella; unclassified Veillonella

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1736 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W3Y561|W3Y561_9FIRM 50S ribosomal protein L21 OS=Veillonella sp. AS16 OX=936589 GN=rplU PE=3 SV=1
MM1 pKa = 7.52TEE3 pKa = 3.6IQALLLLKK11 pKa = 10.73ASLEE15 pKa = 4.24SADD18 pKa = 3.25IHH20 pKa = 5.8GVEE23 pKa = 5.41SILSDD28 pKa = 3.35DD29 pKa = 4.49CEE31 pKa = 4.38YY32 pKa = 10.69MSTGRR37 pKa = 11.84GIIGRR42 pKa = 11.84NRR44 pKa = 11.84SEE46 pKa = 4.24TIDD49 pKa = 3.76FLSSMMEE56 pKa = 4.09SIKK59 pKa = 10.7ADD61 pKa = 3.37RR62 pKa = 11.84VPVNCNVMHH71 pKa = 6.23ITDD74 pKa = 3.77VYY76 pKa = 11.29EE77 pKa = 4.36EE78 pKa = 4.52GALFATGRR86 pKa = 11.84HH87 pKa = 5.28GLSVSYY93 pKa = 10.5EE94 pKa = 4.03SGDD97 pKa = 3.5TYY99 pKa = 11.61VYY101 pKa = 10.58MLFIDD106 pKa = 4.09VNDD109 pKa = 3.73EE110 pKa = 4.07GLVDD114 pKa = 5.33RR115 pKa = 11.84IVSSQEE121 pKa = 3.84NYY123 pKa = 10.59SIAYY127 pKa = 7.48DD128 pKa = 3.75TLRR131 pKa = 11.84LNDD134 pKa = 4.96DD135 pKa = 3.51EE136 pKa = 5.07PEE138 pKa = 4.31YY139 pKa = 11.37AFTTAPTTVKK149 pKa = 10.7DD150 pKa = 3.72WITALSIWLEE160 pKa = 4.04TDD162 pKa = 3.02NVDD165 pKa = 3.11IDD167 pKa = 3.75DD168 pKa = 4.73FYY170 pKa = 11.67RR171 pKa = 11.84YY172 pKa = 8.99IDD174 pKa = 3.51EE175 pKa = 4.23DD176 pKa = 3.93TRR178 pKa = 11.84VVFQKK183 pKa = 11.05GDD185 pKa = 3.45AEE187 pKa = 5.22SITLEE192 pKa = 4.12NGLDD196 pKa = 3.43VEE198 pKa = 5.73DD199 pKa = 5.74YY200 pKa = 10.97FDD202 pKa = 4.19QLMNQHH208 pKa = 6.37FDD210 pKa = 3.52AVPHH214 pKa = 7.17IIRR217 pKa = 11.84DD218 pKa = 3.73DD219 pKa = 4.22DD220 pKa = 4.8DD221 pKa = 5.26NLILTYY227 pKa = 11.14GPMSLIATLNEE238 pKa = 4.35DD239 pKa = 3.35GALALISIYY248 pKa = 10.26IDD250 pKa = 3.02IRR252 pKa = 11.84DD253 pKa = 3.77EE254 pKa = 4.24DD255 pKa = 3.95VSDD258 pKa = 3.36EE259 pKa = 4.1VGYY262 pKa = 10.4IEE264 pKa = 5.47EE265 pKa = 5.98DD266 pKa = 3.01ITEE269 pKa = 4.66IIYY272 pKa = 10.73DD273 pKa = 4.15DD274 pKa = 3.87EE275 pKa = 7.39DD276 pKa = 3.65ITEE279 pKa = 4.13VAHH282 pKa = 7.89DD283 pKa = 4.3DD284 pKa = 4.11FEE286 pKa = 4.57

Molecular weight: 32.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W3Y1K6|W3Y1K6_9FIRM BMC domain protein OS=Veillonella sp. AS16 OX=936589 GN=HMPREF1521_0856 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.31QPNTLWRR12 pKa = 11.84KK13 pKa = 6.72RR14 pKa = 11.84THH16 pKa = 6.25GFRR19 pKa = 11.84EE20 pKa = 3.78RR21 pKa = 11.84MKK23 pKa = 10.34TIGGRR28 pKa = 11.84LVLKK32 pKa = 10.36RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.84GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1736

0

1736

572448

34

2862

329.8

36.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.23 ± 0.066

1.035 ± 0.022

5.876 ± 0.047

6.316 ± 0.068

3.779 ± 0.045

7.589 ± 0.069

2.235 ± 0.032

7.486 ± 0.063

5.851 ± 0.056

9.002 ± 0.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.008 ± 0.031

4.293 ± 0.063

3.699 ± 0.036

3.353 ± 0.037

4.526 ± 0.05

5.683 ± 0.043

5.798 ± 0.061

7.747 ± 0.05

0.9 ± 0.022

3.594 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski