Apibacter adventoris

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Apibacter

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2420 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S8ACM7|A0A2S8ACM7_9FLAO Nuclease SbcCD subunit D OS=Apibacter adventoris OX=1679466 GN=sbcD PE=3 SV=1
MM1 pKa = 7.78AIKK4 pKa = 9.16ITDD7 pKa = 3.28EE8 pKa = 4.77CINCGACEE16 pKa = 4.03PEE18 pKa = 4.51CPNNAIYY25 pKa = 10.44EE26 pKa = 4.38GAVDD30 pKa = 3.55WKK32 pKa = 9.98MSEE35 pKa = 4.08GTEE38 pKa = 3.97LTGMIVTKK46 pKa = 10.14TGLSIDD52 pKa = 3.64ADD54 pKa = 3.97APQKK58 pKa = 10.38PLSDD62 pKa = 4.84DD63 pKa = 2.75IYY65 pKa = 11.34YY66 pKa = 10.02IVTDD70 pKa = 3.63KK71 pKa = 10.8CTEE74 pKa = 3.87CEE76 pKa = 4.36GFHH79 pKa = 7.15EE80 pKa = 5.02EE81 pKa = 4.11PQCAAVCPVDD91 pKa = 4.51CCVPDD96 pKa = 4.45DD97 pKa = 3.94NHH99 pKa = 7.13VEE101 pKa = 4.1TSEE104 pKa = 3.94EE105 pKa = 3.86LLAKK109 pKa = 10.5KK110 pKa = 10.44NFLHH114 pKa = 6.95SSSS117 pKa = 3.56

Molecular weight: 12.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S8AGS1|A0A2S8AGS1_9FLAO Uncharacterized protein OS=Apibacter adventoris OX=1679466 GN=C4S77_01955 PE=4 SV=1
MM1 pKa = 7.5AKK3 pKa = 10.25EE4 pKa = 3.94SMKK7 pKa = 10.47ARR9 pKa = 11.84EE10 pKa = 4.26RR11 pKa = 11.84KK12 pKa = 9.55RR13 pKa = 11.84EE14 pKa = 3.95ALAAKK19 pKa = 9.76YY20 pKa = 9.22AAKK23 pKa = 10.34RR24 pKa = 11.84KK25 pKa = 9.11ALKK28 pKa = 10.1EE29 pKa = 4.16AGDD32 pKa = 3.85YY33 pKa = 8.4EE34 pKa = 4.6ALQKK38 pKa = 10.73LPKK41 pKa = 9.9NSSPVRR47 pKa = 11.84LHH49 pKa = 6.16NRR51 pKa = 11.84CKK53 pKa = 9.95LTGRR57 pKa = 11.84PRR59 pKa = 11.84GYY61 pKa = 9.31MRR63 pKa = 11.84VFGISRR69 pKa = 11.84VTFRR73 pKa = 11.84EE74 pKa = 3.86MANEE78 pKa = 3.77GLIPGVKK85 pKa = 9.29KK86 pKa = 10.96ASWW89 pKa = 3.03

Molecular weight: 10.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2420

0

2420

786421

38

3284

325.0

37.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.965 ± 0.049

0.856 ± 0.017

5.025 ± 0.034

6.681 ± 0.056

5.254 ± 0.048

6.004 ± 0.049

1.643 ± 0.021

9.605 ± 0.061

9.213 ± 0.047

9.335 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.031 ± 0.02

6.7 ± 0.05

3.347 ± 0.026

3.453 ± 0.029

3.04 ± 0.033

6.67 ± 0.039

5.169 ± 0.033

5.199 ± 0.039

1.0 ± 0.019

4.812 ± 0.047
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski