Gordonia phage EpicDab

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 24 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D6E509|A0A4D6E509_9CAUD Uncharacterized protein OS=Gordonia phage EpicDab OX=2608086 GN=21 PE=4 SV=1
MM1 pKa = 7.74AIDD4 pKa = 3.57IAAGVRR10 pKa = 11.84AVIAEE15 pKa = 4.3LEE17 pKa = 4.37TAGIAAYY24 pKa = 9.94DD25 pKa = 3.81SPAKK29 pKa = 10.49VNPPCAYY36 pKa = 9.87VQPTKK41 pKa = 10.97LDD43 pKa = 3.31GFTLGDD49 pKa = 3.83CAEE52 pKa = 4.3LTVQVFLCAPANSAEE67 pKa = 4.34VVEE70 pKa = 4.71PMLGTLLNAALGVLDD85 pKa = 3.58PTEE88 pKa = 4.44PVTLNATLALDD99 pKa = 4.02VGQVPCYY106 pKa = 10.03IVTASTDD113 pKa = 3.14TT114 pKa = 3.64

Molecular weight: 11.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D6E3W7|A0A4D6E3W7_9CAUD Uncharacterized protein OS=Gordonia phage EpicDab OX=2608086 GN=23 PE=4 SV=1
MM1 pKa = 7.99ADD3 pKa = 2.91AQLRR7 pKa = 11.84VDD9 pKa = 4.22GARR12 pKa = 11.84QLRR15 pKa = 11.84TSMRR19 pKa = 11.84RR20 pKa = 11.84AGIDD24 pKa = 3.17MRR26 pKa = 11.84EE27 pKa = 4.1LRR29 pKa = 11.84DD30 pKa = 3.48THH32 pKa = 8.24AEE34 pKa = 3.88AARR37 pKa = 11.84LVAARR42 pKa = 11.84ADD44 pKa = 3.59PPRR47 pKa = 11.84RR48 pKa = 11.84TGRR51 pKa = 11.84LAATIRR57 pKa = 11.84ASGTQTQAVVRR68 pKa = 11.84AGYY71 pKa = 10.73ARR73 pKa = 11.84VPYY76 pKa = 10.38APVIHH81 pKa = 6.77WGWPARR87 pKa = 11.84GIRR90 pKa = 11.84AQPFLTDD97 pKa = 3.6AAQASEE103 pKa = 4.17PAWIEE108 pKa = 3.71LYY110 pKa = 9.63TRR112 pKa = 11.84HH113 pKa = 5.77VEE115 pKa = 4.34QILTTIEE122 pKa = 4.23GASTPP127 pKa = 3.79

Molecular weight: 13.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

24

0

24

5225

60

628

217.7

23.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.392 ± 0.849

0.842 ± 0.204

6.488 ± 0.389

4.823 ± 0.259

2.718 ± 0.269

9.206 ± 0.878

2.373 ± 0.328

4.191 ± 0.339

2.258 ± 0.339

7.579 ± 0.388

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.761 ± 0.203

2.469 ± 0.27

7.196 ± 0.57

3.081 ± 0.242

7.522 ± 0.74

4.498 ± 0.297

7.196 ± 0.597

7.215 ± 0.537

2.278 ± 0.276

1.914 ± 0.201
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski