Komagataeibacter medellinensis (strain NBRC 3288 / BCRC 11682 / LMG 1693 / Kondo 51) (Gluconacetobacter medellinensis)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter; Komagataeibacter medellinensis

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3116 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G2I5K6|G2I5K6_KOMMN Ribosomal RNA small subunit methyltransferase A OS=Komagataeibacter medellinensis (strain NBRC 3288 / BCRC 11682 / LMG 1693 / Kondo 51) OX=634177 GN=rsmA PE=3 SV=1
MM1 pKa = 7.7AATGLQQVEE10 pKa = 4.96GIEE13 pKa = 4.01NMEE16 pKa = 4.28TLTINIGGMTCDD28 pKa = 3.34GCASKK33 pKa = 10.75VVHH36 pKa = 6.31ALEE39 pKa = 4.34SVEE42 pKa = 4.11GVSMVQVSLEE52 pKa = 4.05KK53 pKa = 10.95GKK55 pKa = 9.19ATVTYY60 pKa = 10.11DD61 pKa = 3.21GRR63 pKa = 11.84YY64 pKa = 8.13TNVDD68 pKa = 3.62DD69 pKa = 5.98LFAAVDD75 pKa = 3.83DD76 pKa = 4.8AGFDD80 pKa = 3.06AGYY83 pKa = 11.01

Molecular weight: 8.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G2I861|G2I861_KOMMN Uncharacterized protein OS=Komagataeibacter medellinensis (strain NBRC 3288 / BCRC 11682 / LMG 1693 / Kondo 51) OX=634177 GN=GLX_29500 PE=4 SV=1
MM1 pKa = 7.39TPGLQRR7 pKa = 11.84EE8 pKa = 4.33AVTWAMTEE16 pKa = 3.4RR17 pKa = 11.84DD18 pKa = 3.54YY19 pKa = 11.57SQRR22 pKa = 11.84RR23 pKa = 11.84ACRR26 pKa = 11.84LIGMDD31 pKa = 3.7PKK33 pKa = 10.22TWRR36 pKa = 11.84CASRR40 pKa = 11.84RR41 pKa = 11.84PDD43 pKa = 3.44DD44 pKa = 3.84AEE46 pKa = 3.85ARR48 pKa = 11.84SRR50 pKa = 11.84LRR52 pKa = 11.84DD53 pKa = 3.33LAGEE57 pKa = 4.32RR58 pKa = 11.84GRR60 pKa = 11.84FGYY63 pKa = 10.13RR64 pKa = 11.84RR65 pKa = 11.84LHH67 pKa = 6.04ILLKK71 pKa = 10.64RR72 pKa = 11.84EE73 pKa = 4.01GVTMNHH79 pKa = 6.21KK80 pKa = 10.36KK81 pKa = 10.48LFRR84 pKa = 11.84LYY86 pKa = 10.26RR87 pKa = 11.84EE88 pKa = 4.15EE89 pKa = 4.08GLSVRR94 pKa = 11.84KK95 pKa = 9.99RR96 pKa = 11.84GGRR99 pKa = 11.84KK100 pKa = 8.5RR101 pKa = 11.84AMGTRR106 pKa = 11.84SPMMLPEE113 pKa = 4.93GPNQRR118 pKa = 11.84WSLDD122 pKa = 3.71FVSDD126 pKa = 3.42ALNNGRR132 pKa = 11.84RR133 pKa = 11.84FRR135 pKa = 11.84VLTVVDD141 pKa = 4.79DD142 pKa = 3.91YY143 pKa = 11.77TRR145 pKa = 11.84EE146 pKa = 4.04CLALVADD153 pKa = 4.69TSLSGEE159 pKa = 3.97RR160 pKa = 11.84LGRR163 pKa = 11.84EE164 pKa = 3.68LDD166 pKa = 3.77RR167 pKa = 11.84IGEE170 pKa = 4.15HH171 pKa = 6.46RR172 pKa = 11.84GFPMMIVSDD181 pKa = 3.75DD182 pKa = 3.46VLYY185 pKa = 10.98RR186 pKa = 11.84EE187 pKa = 4.01ASGRR191 pKa = 11.84FGNTSPSAVCTVVEE205 pKa = 5.29KK206 pKa = 11.09YY207 pKa = 10.4CKK209 pKa = 9.56QKK211 pKa = 10.73PGGLHH216 pKa = 6.42RR217 pKa = 11.84KK218 pKa = 9.17IKK220 pKa = 9.97VLPAIANTEE229 pKa = 4.05SRR231 pKa = 11.84SAA233 pKa = 3.3

Molecular weight: 26.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3116

0

3116

994498

26

2848

319.2

34.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.013 ± 0.062

1.11 ± 0.016

5.531 ± 0.029

4.845 ± 0.043

3.355 ± 0.028

8.577 ± 0.037

2.658 ± 0.02

4.94 ± 0.032

2.491 ± 0.037

10.026 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.958 ± 0.022

2.638 ± 0.028

5.71 ± 0.036

3.541 ± 0.028

7.568 ± 0.047

5.284 ± 0.028

5.785 ± 0.03

7.312 ± 0.042

1.437 ± 0.019

2.22 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski