Synechococcus phage S-CBP1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; unclassified Autographiviridae

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 50 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A096VKD1|A0A096VKD1_9CAUD Uncharacterized protein OS=Synechococcus phage S-CBP1 OX=1273711 GN=S-CBP1_0008 PE=4 SV=1
MM1 pKa = 6.97TTTIPIVLTGQSLVDD16 pKa = 3.6YY17 pKa = 10.39VDD19 pKa = 3.2EE20 pKa = 4.57RR21 pKa = 11.84KK22 pKa = 10.24ALIEE26 pKa = 4.27RR27 pKa = 11.84GEE29 pKa = 4.07LTRR32 pKa = 11.84TDD34 pKa = 4.64LIKK37 pKa = 10.96DD38 pKa = 3.26AGYY41 pKa = 11.23VSDD44 pKa = 4.09NGKK47 pKa = 9.94ARR49 pKa = 11.84YY50 pKa = 9.32VDD52 pKa = 5.86FYY54 pKa = 11.4TEE56 pKa = 4.04LLNARR61 pKa = 11.84GITPVTNRR69 pKa = 11.84DD70 pKa = 3.35IEE72 pKa = 4.55DD73 pKa = 3.71NEE75 pKa = 3.87YY76 pKa = 11.16DD77 pKa = 4.81ALNEE81 pKa = 4.16DD82 pKa = 3.79EE83 pKa = 4.93KK84 pKa = 11.67ALYY87 pKa = 10.14DD88 pKa = 3.92YY89 pKa = 11.32LDD91 pKa = 3.84EE92 pKa = 5.04QSFTEE97 pKa = 4.15KK98 pKa = 9.38WDD100 pKa = 3.39HH101 pKa = 6.38EE102 pKa = 4.36EE103 pKa = 4.29FIEE106 pKa = 5.32FLVEE110 pKa = 4.17LKK112 pKa = 11.03DD113 pKa = 3.69NGIEE117 pKa = 4.27TVSSFEE123 pKa = 4.33DD124 pKa = 3.03AFYY127 pKa = 10.85SYY129 pKa = 11.43NDD131 pKa = 3.58EE132 pKa = 4.26YY133 pKa = 10.38WAEE136 pKa = 3.73RR137 pKa = 11.84HH138 pKa = 5.44FAEE141 pKa = 4.95EE142 pKa = 4.16YY143 pKa = 8.85VNEE146 pKa = 4.21VEE148 pKa = 5.33SIQDD152 pKa = 3.62SIVYY156 pKa = 9.31HH157 pKa = 6.66AIDD160 pKa = 3.48WQAVWDD166 pKa = 3.85HH167 pKa = 4.94QLRR170 pKa = 11.84YY171 pKa = 10.14DD172 pKa = 3.96FCTIEE177 pKa = 3.91HH178 pKa = 6.53GGWTFFFRR186 pKa = 11.84NYY188 pKa = 10.46

Molecular weight: 22.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A096VKE7|A0A096VKE7_9CAUD Uncharacterized protein OS=Synechococcus phage S-CBP1 OX=1273711 GN=S-CBP1_0023 PE=4 SV=1
MM1 pKa = 6.26TRR3 pKa = 11.84ARR5 pKa = 11.84IEE7 pKa = 3.97YY8 pKa = 10.12ARR10 pKa = 11.84GRR12 pKa = 11.84GGGGRR17 pKa = 11.84GGGGRR22 pKa = 11.84GGGSRR27 pKa = 11.84GRR29 pKa = 11.84GGGGGGRR36 pKa = 11.84SSGGGGGGRR45 pKa = 11.84SSGGGGGGGRR55 pKa = 11.84AAASSAGRR63 pKa = 11.84SAASTGSFTSANAQALRR80 pKa = 11.84QAGVSRR86 pKa = 11.84SRR88 pKa = 11.84IQNLRR93 pKa = 11.84SQSQNINNRR102 pKa = 11.84NSAAADD108 pKa = 3.04ARR110 pKa = 11.84AAMDD114 pKa = 4.22PSVAGAMEE122 pKa = 4.12AQANRR127 pKa = 11.84GLNIGQQFYY136 pKa = 10.96DD137 pKa = 3.46SPEE140 pKa = 3.86FQQALGQSGLSPQQIAQYY158 pKa = 11.33AMSQGYY164 pKa = 8.9GLGNQFMDD172 pKa = 3.64QFGTTTTNRR181 pKa = 11.84SISGATKK188 pKa = 9.77YY189 pKa = 10.41RR190 pKa = 11.84QALKK194 pKa = 10.19IAAAQGRR201 pKa = 11.84GTNLIGGRR209 pKa = 11.84EE210 pKa = 4.05AKK212 pKa = 10.41QIAKK216 pKa = 9.3QFKK219 pKa = 10.29NKK221 pKa = 9.12TDD223 pKa = 3.81LNFARR228 pKa = 11.84SLDD231 pKa = 3.88KK232 pKa = 11.18INANKK237 pKa = 9.43PNMMPIGLTGGVLNRR252 pKa = 11.84LSRR255 pKa = 11.84NKK257 pKa = 10.43DD258 pKa = 2.99GSLSRR263 pKa = 11.84MGMMPSSDD271 pKa = 3.62GFLKK275 pKa = 10.52ILANMNDD282 pKa = 3.13RR283 pKa = 11.84WTAGDD288 pKa = 3.72ARR290 pKa = 11.84NGNPSKK296 pKa = 10.75RR297 pKa = 11.84IPGTGKK303 pKa = 9.69FRR305 pKa = 11.84RR306 pKa = 11.84TDD308 pKa = 3.48TIYY311 pKa = 11.32GLMSDD316 pKa = 3.76GSFRR320 pKa = 11.84QTPGVGKK327 pKa = 10.11GWADD331 pKa = 3.26TRR333 pKa = 11.84FGQPEE338 pKa = 4.15TTQYY342 pKa = 10.17EE343 pKa = 4.29PWYY346 pKa = 9.04TPPEE350 pKa = 4.36DD351 pKa = 3.29QGVASVEE358 pKa = 4.4DD359 pKa = 4.07YY360 pKa = 11.65GEE362 pKa = 4.43APLPPEE368 pKa = 4.4EE369 pKa = 5.33PMTTDD374 pKa = 3.41SNQSGAGADD383 pKa = 3.53LASFATGWKK392 pKa = 8.36GARR395 pKa = 11.84GARR398 pKa = 11.84ARR400 pKa = 11.84AGRR403 pKa = 11.84KK404 pKa = 8.64AQGTGSMRR412 pKa = 11.84IAPTYY417 pKa = 9.38GAGVGSNFGG426 pKa = 3.39

Molecular weight: 43.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

50

0

50

13376

32

1402

267.5

29.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.824 ± 0.621

0.733 ± 0.159

6.347 ± 0.3

6.011 ± 0.422

3.514 ± 0.186

7.401 ± 0.447

1.391 ± 0.185

5.084 ± 0.208

5.233 ± 0.457

8.074 ± 0.348

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.385 ± 0.197

4.987 ± 0.313

4.224 ± 0.229

4.575 ± 0.296

5.51 ± 0.351

6.788 ± 0.463

6.699 ± 0.596

6.28 ± 0.344

1.368 ± 0.147

3.574 ± 0.267
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski