Arthrobacter phage Wilde

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Tankvirus; unclassified Tankvirus

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 109 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0U4KBW5|A0A0U4KBW5_9CAUD Portal protein OS=Arthrobacter phage Wilde OX=1772323 GN=17 PE=4 SV=1
MM1 pKa = 7.95ALRR4 pKa = 11.84IIYY7 pKa = 8.23KK8 pKa = 7.54TEE10 pKa = 4.09CDD12 pKa = 3.54CGGEE16 pKa = 4.37MVSVTHH22 pKa = 7.61DD23 pKa = 3.53LTQSGEE29 pKa = 4.2DD30 pKa = 3.43GTVTIDD36 pKa = 4.45LDD38 pKa = 3.66MLGDD42 pKa = 3.53MTLICNKK49 pKa = 9.94CDD51 pKa = 3.67DD52 pKa = 4.02QAFLPNVGDD61 pKa = 4.04TIIDD65 pKa = 3.8GDD67 pKa = 4.18DD68 pKa = 3.08LL69 pKa = 6.0

Molecular weight: 7.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0U4KSM3|A0A0U4KSM3_9CAUD Uncharacterized protein OS=Arthrobacter phage Wilde OX=1772323 GN=3 PE=4 SV=1
MM1 pKa = 7.48LTRR4 pKa = 11.84KK5 pKa = 8.18EE6 pKa = 3.83LRR8 pKa = 11.84EE9 pKa = 3.88RR10 pKa = 11.84RR11 pKa = 11.84HH12 pKa = 5.78RR13 pKa = 11.84SYY15 pKa = 11.46LVLNALYY22 pKa = 10.51RR23 pKa = 11.84EE24 pKa = 4.4TPWYY28 pKa = 9.82LLHH31 pKa = 6.32EE32 pKa = 4.36RR33 pKa = 11.84SMIRR37 pKa = 11.84EE38 pKa = 4.44AMRR41 pKa = 11.84SAGPVSAA48 pKa = 5.36

Molecular weight: 5.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

109

0

109

21287

31

2075

195.3

21.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.344 ± 0.416

0.864 ± 0.129

6.704 ± 0.192

6.929 ± 0.437

3.302 ± 0.201

8.202 ± 0.303

2.119 ± 0.206

5.219 ± 0.239

4.707 ± 0.258

7.361 ± 0.242

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.645 ± 0.108

3.537 ± 0.274

5.074 ± 0.322

3.378 ± 0.17

5.637 ± 0.287

5.788 ± 0.212

6.737 ± 0.286

6.647 ± 0.226

2.072 ± 0.141

2.734 ± 0.203
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski