Verrucomicrobia bacterium IMCC26134

Taxonomy: cellular organisms; Bacteria; PVC group; Verrucomicrobia; unclassified Verrucomicrobia

Average proteome isoelectric point is 6.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2622 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0E3YVR8|A0A0E3YVR8_9BACT Uncharacterized protein OS=Verrucomicrobia bacterium IMCC26134 OX=1637999 GN=IMCC26134_15165 PE=4 SV=1
MM1 pKa = 7.6AGAAMSVFRR10 pKa = 11.84GCSGAGIVAAGKK22 pKa = 9.89EE23 pKa = 4.25LLSDD27 pKa = 3.76SQSSYY32 pKa = 11.46VMATDD37 pKa = 3.46KK38 pKa = 11.35LDD40 pKa = 3.99DD41 pKa = 3.69VRR43 pKa = 11.84SDD45 pKa = 2.75EE46 pKa = 4.05WAVMGEE52 pKa = 4.03YY53 pKa = 10.45HH54 pKa = 7.02EE55 pKa = 5.45LADD58 pKa = 5.08LLVEE62 pKa = 4.43IQAAQYY68 pKa = 10.15IVYY71 pKa = 9.08PSFAAGVEE79 pKa = 4.28WEE81 pKa = 4.27EE82 pKa = 4.39GG83 pKa = 3.38

Molecular weight: 8.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0E3UJH4|A0A0E3UJH4_9BACT Peptidase_M48 domain-containing protein OS=Verrucomicrobia bacterium IMCC26134 OX=1637999 GN=IMCC26134_13255 PE=4 SV=1
MM1 pKa = 7.44SPTFRR6 pKa = 11.84PHH8 pKa = 5.67KK9 pKa = 9.86LKK11 pKa = 10.47RR12 pKa = 11.84ARR14 pKa = 11.84KK15 pKa = 7.58IGYY18 pKa = 7.9RR19 pKa = 11.84ARR21 pKa = 11.84KK22 pKa = 6.74ATRR25 pKa = 11.84GGRR28 pKa = 11.84KK29 pKa = 8.95VLASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.54GRR39 pKa = 11.84KK40 pKa = 8.98RR41 pKa = 11.84LTVVV45 pKa = 3.08

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2622

0

2622

1010659

41

13856

385.5

41.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.102 ± 0.065

0.91 ± 0.023

5.118 ± 0.037

4.994 ± 0.07

3.926 ± 0.034

8.418 ± 0.079

2.098 ± 0.041

4.803 ± 0.044

3.603 ± 0.052

10.618 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.728 ± 0.031

3.202 ± 0.061

5.277 ± 0.051

3.007 ± 0.028

6.365 ± 0.087

6.158 ± 0.082

6.527 ± 0.14

7.207 ± 0.042

1.469 ± 0.031

2.471 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski