Trichinella murrelli

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Enoplea; Dorylaimia; Trichinellida; Trichinellidae; Trichinella

Average proteome isoelectric point is 7.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 17983 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0V0U2Q7|A0A0V0U2Q7_9BILA Thioredoxin domain-containing protein 17 OS=Trichinella murrelli OX=144512 GN=ATE1 PE=3 SV=1
MM1 pKa = 7.71EE2 pKa = 5.35DD3 pKa = 2.95WEE5 pKa = 4.84IFDD8 pKa = 5.02FDD10 pKa = 4.01VDD12 pKa = 3.84LMLWLVVLVILLHH25 pKa = 4.69MAKK28 pKa = 10.38YY29 pKa = 10.55LLDD32 pKa = 3.73YY33 pKa = 11.44LEE35 pKa = 4.54TFQEE39 pKa = 4.26KK40 pKa = 10.83EE41 pKa = 3.96EE42 pKa = 4.85LIQLLNEE49 pKa = 3.94THH51 pKa = 6.55YY52 pKa = 11.81SMQQVEE58 pKa = 4.75QIVEE62 pKa = 4.18HH63 pKa = 5.41QQSVDD68 pKa = 3.12NKK70 pKa = 10.54DD71 pKa = 4.01YY72 pKa = 11.01IGEE75 pKa = 4.15PYY77 pKa = 10.21IFYY80 pKa = 10.94DD81 pKa = 3.27PDD83 pKa = 4.24KK84 pKa = 11.38DD85 pKa = 4.21VFTLQIDD92 pKa = 4.34FNNLSEE98 pKa = 4.58DD99 pKa = 3.47NCIKK103 pKa = 10.69VCLAVWNALVNIDD116 pKa = 4.99SEE118 pKa = 4.61DD119 pKa = 3.61DD120 pKa = 3.76SEE122 pKa = 5.38EE123 pKa = 4.4SDD125 pKa = 3.61EE126 pKa = 4.16QQ127 pKa = 3.8

Molecular weight: 15.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0V0SZ18|A0A0V0SZ18_9BILA Uncharacterized protein OS=Trichinella murrelli OX=144512 GN=T05_1117 PE=4 SV=1
SS1 pKa = 5.89RR2 pKa = 11.84TTRR5 pKa = 11.84SGSRR9 pKa = 11.84TTRR12 pKa = 11.84SRR14 pKa = 11.84SRR16 pKa = 11.84TTRR19 pKa = 11.84SRR21 pKa = 11.84SRR23 pKa = 11.84TTRR26 pKa = 11.84SRR28 pKa = 11.84SRR30 pKa = 11.84TTRR33 pKa = 11.84SRR35 pKa = 3.15

Molecular weight: 4.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14367

3616

17983

8302106

30

15251

461.7

52.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.457 ± 0.017

2.636 ± 0.017

5.242 ± 0.013

6.333 ± 0.024

4.575 ± 0.014

4.979 ± 0.02

2.466 ± 0.007

5.563 ± 0.013

6.027 ± 0.02

9.67 ± 0.026

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.418 ± 0.008

4.993 ± 0.012

4.331 ± 0.018

4.263 ± 0.016

5.666 ± 0.018

8.361 ± 0.018

5.315 ± 0.014

6.418 ± 0.014

1.211 ± 0.005

3.073 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski