Amino acid dipepetide frequency for Arracacha virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.871AlaAla: 5.871 ± 1.615
0.978AlaCys: 0.978 ± 0.478
2.74AlaAsp: 2.74 ± 0.532
3.327AlaGlu: 3.327 ± 1.048
2.935AlaPhe: 2.935 ± 0.624
3.523AlaGly: 3.523 ± 0.779
0.978AlaHis: 0.978 ± 0.327
2.348AlaIle: 2.348 ± 1.34
4.501AlaLys: 4.501 ± 1.045
6.849AlaLeu: 6.849 ± 0.748
2.153AlaMet: 2.153 ± 0.633
2.935AlaAsn: 2.935 ± 1.185
2.348AlaPro: 2.348 ± 0.566
1.761AlaGln: 1.761 ± 0.62
1.957AlaArg: 1.957 ± 0.753
8.806AlaSer: 8.806 ± 1.677
3.523AlaThr: 3.523 ± 0.835
4.501AlaVal: 4.501 ± 0.977
0.783AlaTrp: 0.783 ± 0.385
1.566AlaTyr: 1.566 ± 0.529
0.0AlaXaa: 0.0 ± 0.0
Cys
1.566CysAla: 1.566 ± 0.883
0.783CysCys: 0.783 ± 0.468
0.783CysAsp: 0.783 ± 0.278
1.566CysGlu: 1.566 ± 0.764
2.935CysPhe: 2.935 ± 0.804
0.978CysGly: 0.978 ± 0.236
0.196CysHis: 0.196 ± 0.117
0.391CysIle: 0.391 ± 0.234
1.37CysLys: 1.37 ± 0.619
2.935CysLeu: 2.935 ± 0.956
0.196CysMet: 0.196 ± 0.117
0.587CysAsn: 0.587 ± 0.351
0.196CysPro: 0.196 ± 0.117
0.0CysGln: 0.0 ± 0.0
0.783CysArg: 0.783 ± 0.313
3.131CysSer: 3.131 ± 0.539
0.783CysThr: 0.783 ± 0.212
1.761CysVal: 1.761 ± 0.663
0.391CysTrp: 0.391 ± 0.395
0.587CysTyr: 0.587 ± 0.351
0.0CysXaa: 0.0 ± 0.0
Asp
5.479AspAla: 5.479 ± 0.892
1.37AspCys: 1.37 ± 0.504
5.088AspAsp: 5.088 ± 0.661
4.305AspGlu: 4.305 ± 0.91
2.935AspPhe: 2.935 ± 1.159
2.74AspGly: 2.74 ± 0.98
0.978AspHis: 0.978 ± 0.436
2.544AspIle: 2.544 ± 1.344
1.761AspLys: 1.761 ± 0.661
5.284AspLeu: 5.284 ± 1.272
0.978AspMet: 0.978 ± 0.236
1.566AspAsn: 1.566 ± 0.545
1.37AspPro: 1.37 ± 0.561
0.783AspGln: 0.783 ± 0.345
2.74AspArg: 2.74 ± 1.182
3.914AspSer: 3.914 ± 0.528
2.544AspThr: 2.544 ± 0.47
4.501AspVal: 4.501 ± 0.845
0.196AspTrp: 0.196 ± 0.117
1.566AspTyr: 1.566 ± 0.598
0.0AspXaa: 0.0 ± 0.0
Glu
3.131GluAla: 3.131 ± 0.489
1.566GluCys: 1.566 ± 0.508
2.544GluAsp: 2.544 ± 0.918
3.131GluGlu: 3.131 ± 0.748
2.74GluPhe: 2.74 ± 1.01
2.935GluGly: 2.935 ± 0.589
0.783GluHis: 0.783 ± 0.326
1.957GluIle: 1.957 ± 0.456
3.327GluLys: 3.327 ± 0.45
6.849GluLeu: 6.849 ± 0.869
1.37GluMet: 1.37 ± 0.491
2.74GluAsn: 2.74 ± 0.707
1.761GluPro: 1.761 ± 0.525
1.174GluGln: 1.174 ± 0.407
3.327GluArg: 3.327 ± 0.834
4.305GluSer: 4.305 ± 0.943
2.544GluThr: 2.544 ± 1.014
6.458GluVal: 6.458 ± 1.171
0.587GluTrp: 0.587 ± 0.425
3.131GluTyr: 3.131 ± 1.041
0.0GluXaa: 0.0 ± 0.0
Phe
1.37PheAla: 1.37 ± 0.65
1.957PheCys: 1.957 ± 0.516
3.523PheAsp: 3.523 ± 0.852
3.131PheGlu: 3.131 ± 0.822
2.348PhePhe: 2.348 ± 0.713
4.697PheGly: 4.697 ± 0.529
0.783PheHis: 0.783 ± 0.237
2.348PheIle: 2.348 ± 0.798
2.348PheLys: 2.348 ± 1.258
6.067PheLeu: 6.067 ± 1.677
0.587PheMet: 0.587 ± 0.482
1.761PheAsn: 1.761 ± 0.678
1.566PhePro: 1.566 ± 0.686
1.37PheGln: 1.37 ± 0.581
2.935PheArg: 2.935 ± 0.91
7.632PheSer: 7.632 ± 0.834
3.327PheThr: 3.327 ± 0.696
4.892PheVal: 4.892 ± 1.132
0.391PheTrp: 0.391 ± 0.209
1.37PheTyr: 1.37 ± 0.29
0.0PheXaa: 0.0 ± 0.0
Gly
2.348GlyAla: 2.348 ± 0.607
1.566GlyCys: 1.566 ± 0.466
4.305GlyAsp: 4.305 ± 0.732
4.892GlyGlu: 4.892 ± 1.044
3.131GlyPhe: 3.131 ± 0.677
5.479GlyGly: 5.479 ± 1.439
0.196GlyHis: 0.196 ± 0.336
1.174GlyIle: 1.174 ± 0.866
2.74GlyLys: 2.74 ± 0.539
4.501GlyLeu: 4.501 ± 0.919
0.783GlyMet: 0.783 ± 0.298
3.131GlyAsn: 3.131 ± 0.772
1.174GlyPro: 1.174 ± 0.439
1.957GlyGln: 1.957 ± 0.408
4.11GlyArg: 4.11 ± 0.554
6.654GlySer: 6.654 ± 1.028
3.914GlyThr: 3.914 ± 1.182
3.131GlyVal: 3.131 ± 0.584
0.196GlyTrp: 0.196 ± 0.242
2.544GlyTyr: 2.544 ± 0.882
0.0GlyXaa: 0.0 ± 0.0
His
1.37HisAla: 1.37 ± 0.519
0.587HisCys: 0.587 ± 0.284
0.587HisAsp: 0.587 ± 0.248
0.978HisGlu: 0.978 ± 0.264
0.196HisPhe: 0.196 ± 0.117
0.978HisGly: 0.978 ± 0.482
0.196HisHis: 0.196 ± 0.231
0.978HisIle: 0.978 ± 0.31
0.978HisLys: 0.978 ± 0.601
0.783HisLeu: 0.783 ± 0.311
0.783HisMet: 0.783 ± 0.321
0.783HisAsn: 0.783 ± 0.344
1.174HisPro: 1.174 ± 0.496
0.391HisGln: 0.391 ± 0.209
1.761HisArg: 1.761 ± 0.877
1.957HisSer: 1.957 ± 0.491
0.978HisThr: 0.978 ± 0.422
1.37HisVal: 1.37 ± 0.466
0.0HisTrp: 0.0 ± 0.0
0.391HisTyr: 0.391 ± 0.465
0.0HisXaa: 0.0 ± 0.0
Ile
3.523IleAla: 3.523 ± 1.374
1.566IleCys: 1.566 ± 0.623
2.153IleAsp: 2.153 ± 0.369
3.131IleGlu: 3.131 ± 1.149
1.761IlePhe: 1.761 ± 0.713
1.957IleGly: 1.957 ± 0.874
0.783IleHis: 0.783 ± 0.237
1.761IleIle: 1.761 ± 1.307
2.935IleLys: 2.935 ± 0.326
3.718IleLeu: 3.718 ± 0.578
0.783IleMet: 0.783 ± 0.487
2.348IleAsn: 2.348 ± 0.673
2.348IlePro: 2.348 ± 0.537
0.587IleGln: 0.587 ± 0.398
3.718IleArg: 3.718 ± 0.673
3.523IleSer: 3.523 ± 0.442
2.544IleThr: 2.544 ± 0.343
3.327IleVal: 3.327 ± 0.688
0.391IleTrp: 0.391 ± 0.483
0.587IleTyr: 0.587 ± 0.268
0.0IleXaa: 0.0 ± 0.0
Lys
4.892LysAla: 4.892 ± 1.269
0.978LysCys: 0.978 ± 0.336
2.348LysAsp: 2.348 ± 0.665
1.957LysGlu: 1.957 ± 0.398
4.892LysPhe: 4.892 ± 1.379
2.544LysGly: 2.544 ± 1.028
1.37LysHis: 1.37 ± 0.29
3.131LysIle: 3.131 ± 1.029
2.348LysLys: 2.348 ± 0.816
6.849LysLeu: 6.849 ± 1.558
0.978LysMet: 0.978 ± 0.743
3.914LysAsn: 3.914 ± 0.767
2.935LysPro: 2.935 ± 0.693
1.761LysGln: 1.761 ± 0.697
3.523LysArg: 3.523 ± 0.767
4.501LysSer: 4.501 ± 1.149
3.327LysThr: 3.327 ± 1.03
4.501LysVal: 4.501 ± 1.003
0.0LysTrp: 0.0 ± 0.0
4.501LysTyr: 4.501 ± 1.248
0.0LysXaa: 0.0 ± 0.0
Leu
4.501LeuAla: 4.501 ± 0.851
1.957LeuCys: 1.957 ± 0.456
5.088LeuAsp: 5.088 ± 1.337
4.11LeuGlu: 4.11 ± 0.535
4.501LeuPhe: 4.501 ± 0.461
5.871LeuGly: 5.871 ± 2.064
1.566LeuHis: 1.566 ± 0.562
4.501LeuIle: 4.501 ± 0.895
7.632LeuLys: 7.632 ± 0.949
10.176LeuLeu: 10.176 ± 2.675
2.544LeuMet: 2.544 ± 0.569
5.479LeuAsn: 5.479 ± 1.23
3.327LeuPro: 3.327 ± 0.729
3.718LeuGln: 3.718 ± 0.71
5.871LeuArg: 5.871 ± 0.987
10.763LeuSer: 10.763 ± 1.029
3.523LeuThr: 3.523 ± 0.848
7.828LeuVal: 7.828 ± 1.109
0.783LeuTrp: 0.783 ± 0.334
3.523LeuTyr: 3.523 ± 0.587
0.0LeuXaa: 0.0 ± 0.0
Met
2.153MetAla: 2.153 ± 0.956
0.196MetCys: 0.196 ± 0.231
0.978MetAsp: 0.978 ± 0.478
1.566MetGlu: 1.566 ± 0.582
1.174MetPhe: 1.174 ± 0.735
1.566MetGly: 1.566 ± 0.594
0.783MetHis: 0.783 ± 0.468
0.391MetIle: 0.391 ± 0.226
0.587MetLys: 0.587 ± 0.353
1.957MetLeu: 1.957 ± 0.791
1.37MetMet: 1.37 ± 0.404
1.37MetAsn: 1.37 ± 0.299
0.391MetPro: 0.391 ± 0.234
0.196MetGln: 0.196 ± 0.25
1.761MetArg: 1.761 ± 0.944
1.761MetSer: 1.761 ± 0.61
0.978MetThr: 0.978 ± 0.458
2.153MetVal: 2.153 ± 0.471
0.196MetTrp: 0.196 ± 0.313
0.978MetTyr: 0.978 ± 0.348
0.0MetXaa: 0.0 ± 0.0
Asn
2.544AsnAla: 2.544 ± 1.124
1.37AsnCys: 1.37 ± 0.449
2.74AsnAsp: 2.74 ± 0.988
2.74AsnGlu: 2.74 ± 0.57
3.131AsnPhe: 3.131 ± 0.514
1.957AsnGly: 1.957 ± 0.419
1.761AsnHis: 1.761 ± 0.538
2.544AsnIle: 2.544 ± 0.592
3.131AsnLys: 3.131 ± 0.983
4.11AsnLeu: 4.11 ± 1.008
0.978AsnMet: 0.978 ± 0.264
1.761AsnAsn: 1.761 ± 0.511
2.153AsnPro: 2.153 ± 0.536
0.783AsnGln: 0.783 ± 0.495
2.348AsnArg: 2.348 ± 0.507
5.675AsnSer: 5.675 ± 0.78
3.131AsnThr: 3.131 ± 1.539
2.153AsnVal: 2.153 ± 0.845
0.196AsnTrp: 0.196 ± 0.117
2.153AsnTyr: 2.153 ± 0.338
0.0AsnXaa: 0.0 ± 0.0
Pro
2.544ProAla: 2.544 ± 0.462
0.196ProCys: 0.196 ± 0.242
1.957ProAsp: 1.957 ± 0.405
2.544ProGlu: 2.544 ± 0.783
1.37ProPhe: 1.37 ± 0.411
1.957ProGly: 1.957 ± 0.448
0.587ProHis: 0.587 ± 0.248
1.174ProIle: 1.174 ± 0.381
2.544ProLys: 2.544 ± 0.572
2.348ProLeu: 2.348 ± 0.731
0.391ProMet: 0.391 ± 0.205
1.174ProAsn: 1.174 ± 0.471
2.153ProPro: 2.153 ± 0.389
1.174ProGln: 1.174 ± 0.571
2.153ProArg: 2.153 ± 0.491
5.284ProSer: 5.284 ± 0.869
2.348ProThr: 2.348 ± 0.697
4.11ProVal: 4.11 ± 0.725
0.391ProTrp: 0.391 ± 0.234
1.37ProTyr: 1.37 ± 0.54
0.0ProXaa: 0.0 ± 0.0
Gln
2.348GlnAla: 2.348 ± 0.584
0.196GlnCys: 0.196 ± 0.117
0.783GlnAsp: 0.783 ± 0.45
0.587GlnGlu: 0.587 ± 0.268
0.783GlnPhe: 0.783 ± 0.326
1.566GlnGly: 1.566 ± 0.559
0.196GlnHis: 0.196 ± 0.117
2.348GlnIle: 2.348 ± 0.925
1.174GlnLys: 1.174 ± 0.387
1.761GlnLeu: 1.761 ± 0.722
0.587GlnMet: 0.587 ± 0.268
0.587GlnAsn: 0.587 ± 0.539
0.391GlnPro: 0.391 ± 0.409
0.587GlnGln: 0.587 ± 0.247
2.544GlnArg: 2.544 ± 0.731
3.327GlnSer: 3.327 ± 1.015
1.761GlnThr: 1.761 ± 0.679
0.978GlnVal: 0.978 ± 0.428
0.0GlnTrp: 0.0 ± 0.0
0.783GlnTyr: 0.783 ± 0.326
0.0GlnXaa: 0.0 ± 0.0
Arg
4.501ArgAla: 4.501 ± 1.14
1.174ArgCys: 1.174 ± 0.418
2.348ArgAsp: 2.348 ± 0.668
3.523ArgGlu: 3.523 ± 0.549
2.544ArgPhe: 2.544 ± 0.811
3.131ArgGly: 3.131 ± 0.881
1.37ArgHis: 1.37 ± 0.464
2.348ArgIle: 2.348 ± 0.662
3.914ArgLys: 3.914 ± 1.151
5.871ArgLeu: 5.871 ± 1.555
1.37ArgMet: 1.37 ± 0.38
3.523ArgAsn: 3.523 ± 0.897
1.566ArgPro: 1.566 ± 0.514
0.783ArgGln: 0.783 ± 0.345
4.11ArgArg: 4.11 ± 0.89
4.892ArgSer: 4.892 ± 0.595
4.501ArgThr: 4.501 ± 0.812
4.11ArgVal: 4.11 ± 0.803
0.587ArgTrp: 0.587 ± 0.394
1.174ArgTyr: 1.174 ± 0.626
0.0ArgXaa: 0.0 ± 0.0
Ser
7.828SerAla: 7.828 ± 1.004
1.761SerCys: 1.761 ± 0.419
3.327SerAsp: 3.327 ± 0.662
6.067SerGlu: 6.067 ± 1.143
6.458SerPhe: 6.458 ± 0.723
7.828SerGly: 7.828 ± 1.005
0.587SerHis: 0.587 ± 0.353
5.088SerIle: 5.088 ± 0.643
6.654SerLys: 6.654 ± 1.409
9.98SerLeu: 9.98 ± 0.849
2.348SerMet: 2.348 ± 1.404
5.088SerAsn: 5.088 ± 1.168
4.501SerPro: 4.501 ± 0.817
2.348SerGln: 2.348 ± 1.049
5.479SerArg: 5.479 ± 0.897
8.023SerSer: 8.023 ± 2.467
5.871SerThr: 5.871 ± 0.756
7.828SerVal: 7.828 ± 1.738
0.587SerTrp: 0.587 ± 0.247
4.11SerTyr: 4.11 ± 0.565
0.0SerXaa: 0.0 ± 0.0
Thr
2.544ThrAla: 2.544 ± 0.634
1.174ThrCys: 1.174 ± 0.677
2.74ThrAsp: 2.74 ± 0.698
3.523ThrGlu: 3.523 ± 1.272
3.131ThrPhe: 3.131 ± 0.61
2.74ThrGly: 2.74 ± 1.046
1.957ThrHis: 1.957 ± 0.451
2.348ThrIle: 2.348 ± 0.82
2.348ThrLys: 2.348 ± 0.998
4.697ThrLeu: 4.697 ± 1.241
0.783ThrMet: 0.783 ± 0.423
2.153ThrAsn: 2.153 ± 0.416
3.523ThrPro: 3.523 ± 1.043
1.37ThrGln: 1.37 ± 0.885
2.74ThrArg: 2.74 ± 0.745
6.262ThrSer: 6.262 ± 1.179
4.305ThrThr: 4.305 ± 0.844
6.067ThrVal: 6.067 ± 1.199
0.196ThrTrp: 0.196 ± 0.242
3.131ThrTyr: 3.131 ± 0.365
0.0ThrXaa: 0.0 ± 0.0
Val
5.088ValAla: 5.088 ± 1.014
1.957ValCys: 1.957 ± 0.612
5.284ValAsp: 5.284 ± 0.489
3.131ValGlu: 3.131 ± 0.585
4.501ValPhe: 4.501 ± 1.441
3.327ValGly: 3.327 ± 0.752
1.566ValHis: 1.566 ± 0.45
3.718ValIle: 3.718 ± 0.617
8.023ValLys: 8.023 ± 1.394
6.262ValLeu: 6.262 ± 1.324
1.37ValMet: 1.37 ± 0.493
4.697ValAsn: 4.697 ± 1.454
3.523ValPro: 3.523 ± 0.681
2.153ValGln: 2.153 ± 1.054
2.74ValArg: 2.74 ± 0.523
7.632ValSer: 7.632 ± 0.991
5.088ValThr: 5.088 ± 0.571
7.436ValVal: 7.436 ± 1.932
0.196ValTrp: 0.196 ± 0.242
3.131ValTyr: 3.131 ± 0.641
0.0ValXaa: 0.0 ± 0.0
Trp
0.196TrpAla: 0.196 ± 0.231
0.196TrpCys: 0.196 ± 0.231
0.196TrpAsp: 0.196 ± 0.117
0.391TrpGlu: 0.391 ± 0.209
0.783TrpPhe: 0.783 ± 0.364
0.196TrpGly: 0.196 ± 0.231
0.0TrpHis: 0.0 ± 0.0
0.587TrpIle: 0.587 ± 0.527
0.196TrpLys: 0.196 ± 0.242
1.37TrpLeu: 1.37 ± 0.467
0.587TrpMet: 0.587 ± 0.353
0.391TrpAsn: 0.391 ± 0.465
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.196TrpArg: 0.196 ± 0.336
0.196TrpSer: 0.196 ± 0.117
0.196TrpThr: 0.196 ± 0.117
0.587TrpVal: 0.587 ± 0.354
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.587TyrAla: 0.587 ± 0.247
0.391TyrCys: 0.391 ± 0.234
3.131TyrAsp: 3.131 ± 0.882
1.761TyrGlu: 1.761 ± 0.593
2.153TyrPhe: 2.153 ± 0.866
1.957TyrGly: 1.957 ± 0.418
0.587TyrHis: 0.587 ± 0.248
1.761TyrIle: 1.761 ± 0.683
2.74TyrLys: 2.74 ± 1.058
4.892TyrLeu: 4.892 ± 1.078
1.37TyrMet: 1.37 ± 0.403
1.37TyrAsn: 1.37 ± 0.854
1.37TyrPro: 1.37 ± 0.387
0.391TyrGln: 0.391 ± 0.3
2.544TyrArg: 2.544 ± 0.631
3.523TyrSer: 3.523 ± 0.938
2.74TyrThr: 2.74 ± 0.329
3.131TyrVal: 3.131 ± 0.783
0.196TyrTrp: 0.196 ± 0.336
1.761TyrTyr: 1.761 ± 0.467
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 9 proteins (5111 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski