Gilvibacter sp. SZ-19

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gilvibacter; unclassified Gilvibacter

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2809 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y0MPK8|A0A1Y0MPK8_9FLAO Uncharacterized protein OS=Gilvibacter sp. SZ-19 OX=754429 GN=BTO09_05445 PE=4 SV=1
MM1 pKa = 6.85NTNSVQRR8 pKa = 11.84IIVDD12 pKa = 3.6YY13 pKa = 11.1QKK15 pKa = 10.37MKK17 pKa = 10.48PEE19 pKa = 3.99VMQQLLEE26 pKa = 4.09QYY28 pKa = 10.26PDD30 pKa = 4.17GYY32 pKa = 10.44DD33 pKa = 3.32TDD35 pKa = 3.81QLIQFKK41 pKa = 9.98NAQGLWVYY49 pKa = 10.18CLEE52 pKa = 4.32VKK54 pKa = 9.92TPEE57 pKa = 3.66TVYY60 pKa = 10.57LVKK63 pKa = 10.69VSRR66 pKa = 11.84KK67 pKa = 9.3LDD69 pKa = 3.62EE70 pKa = 5.43AIDD73 pKa = 3.65RR74 pKa = 11.84ALAEE78 pKa = 4.68DD79 pKa = 5.73DD80 pKa = 3.88EE81 pKa = 6.69DD82 pKa = 4.18EE83 pKa = 4.94DD84 pKa = 4.91YY85 pKa = 11.3SYY87 pKa = 11.63QSDD90 pKa = 4.66DD91 pKa = 3.99IEE93 pKa = 6.17DD94 pKa = 3.63SADD97 pKa = 3.33YY98 pKa = 11.14SDD100 pKa = 4.49YY101 pKa = 11.62SDD103 pKa = 3.92DD104 pKa = 4.43FEE106 pKa = 4.66YY107 pKa = 11.3AA108 pKa = 3.19

Molecular weight: 12.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y0MKY4|A0A1Y0MKY4_9FLAO DUF4129 domain-containing protein OS=Gilvibacter sp. SZ-19 OX=754429 GN=BTO09_01050 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.13RR10 pKa = 11.84KK11 pKa = 9.48RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.49HH16 pKa = 3.94GFRR19 pKa = 11.84EE20 pKa = 4.18RR21 pKa = 11.84MASVNGRR28 pKa = 11.84KK29 pKa = 9.18VLASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.04GRR39 pKa = 11.84KK40 pKa = 8.7KK41 pKa = 9.83LTVSSEE47 pKa = 3.9PRR49 pKa = 11.84HH50 pKa = 5.77KK51 pKa = 10.61KK52 pKa = 9.84

Molecular weight: 6.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2809

0

2809

944669

38

2532

336.3

37.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.912 ± 0.046

0.756 ± 0.015

5.978 ± 0.046

6.431 ± 0.049

5.022 ± 0.038

6.938 ± 0.045

1.78 ± 0.025

6.726 ± 0.04

6.169 ± 0.062

9.706 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.294 ± 0.025

5.112 ± 0.044

3.786 ± 0.028

3.916 ± 0.03

4.048 ± 0.03

6.085 ± 0.037

5.671 ± 0.055

6.571 ± 0.036

1.133 ± 0.017

3.968 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski