Corynebacterium striatum

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 5.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2642 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A376GVJ5|A0A376GVJ5_CORST 3-hydroxybutyryl-CoA dehydratase OS=Corynebacterium striatum OX=43770 GN=echA8_2 PE=3 SV=1
MM1 pKa = 7.24LRR3 pKa = 11.84SAVALLGAAVICLPLASCADD23 pKa = 4.06DD24 pKa = 4.18AAQDD28 pKa = 3.63NSPAFDD34 pKa = 3.59TVQNSATDD42 pKa = 3.62NAPDD46 pKa = 4.4DD47 pKa = 4.5SEE49 pKa = 4.58STDD52 pKa = 3.98DD53 pKa = 4.52PVSEE57 pKa = 4.65PPAAGASPTLPAEE70 pKa = 4.5SPAEE74 pKa = 4.01EE75 pKa = 4.35EE76 pKa = 4.3DD77 pKa = 4.02AEE79 pKa = 4.35SCEE82 pKa = 4.58TIDD85 pKa = 3.6AHH87 pKa = 6.82AAYY90 pKa = 9.46EE91 pKa = 4.28SGIGTIPPWNDD102 pKa = 3.19NNWTLVDD109 pKa = 4.89FSQFDD114 pKa = 3.75PCAEE118 pKa = 4.64LSWQTISIEE127 pKa = 4.29RR128 pKa = 11.84GTSSSPYY135 pKa = 10.05HH136 pKa = 6.99IMLFHH141 pKa = 6.96KK142 pKa = 10.77GEE144 pKa = 4.22YY145 pKa = 10.12LGTATAEE152 pKa = 4.25PYY154 pKa = 11.12GFFPTVEE161 pKa = 4.04QVSSNEE167 pKa = 3.75IAVTYY172 pKa = 8.91HH173 pKa = 6.32WPRR176 pKa = 11.84EE177 pKa = 4.23GEE179 pKa = 4.31SNAGHH184 pKa = 6.41TGEE187 pKa = 4.11THH189 pKa = 7.41AGFRR193 pKa = 11.84WDD195 pKa = 4.92DD196 pKa = 3.74GQQKK200 pKa = 10.7VIMSGDD206 pKa = 3.67VPPGSS211 pKa = 3.56

Molecular weight: 22.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M2XBA3|A0A0M2XBA3_CORST Cold shock protein OS=Corynebacterium striatum OX=43770 GN=cspA PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84KK18 pKa = 8.59HH19 pKa = 4.58GFRR22 pKa = 11.84TRR24 pKa = 11.84MSTRR28 pKa = 11.84AGRR31 pKa = 11.84AIVAARR37 pKa = 11.84RR38 pKa = 11.84KK39 pKa = 9.71KK40 pKa = 10.51GRR42 pKa = 11.84AKK44 pKa = 10.73LSAA47 pKa = 3.92

Molecular weight: 5.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2642

0

2642

831499

29

3042

314.7

34.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.793 ± 0.067

0.728 ± 0.015

5.82 ± 0.044

6.516 ± 0.054

3.473 ± 0.035

8.196 ± 0.045

2.14 ± 0.023

5.09 ± 0.034

3.694 ± 0.045

9.521 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.284 ± 0.019

3.064 ± 0.027

4.929 ± 0.036

3.348 ± 0.029

5.924 ± 0.045

5.892 ± 0.033

5.914 ± 0.028

7.964 ± 0.047

1.382 ± 0.021

2.329 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski