Sulfolobus monocaudavirus SMV3

Taxonomy: Viruses; Bicaudaviridae; unclassified Bicaudaviridae

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 87 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0N9P6R5|A0A0N9P6R5_9VIRU Uncharacterized protein OS=Sulfolobus monocaudavirus SMV3 OX=1732177 PE=4 SV=1
MM1 pKa = 7.5EE2 pKa = 5.46PSEE5 pKa = 3.99VAGIIIEE12 pKa = 4.23RR13 pKa = 11.84VVDD16 pKa = 3.56YY17 pKa = 7.82CTNISGDD24 pKa = 3.63TVLDD28 pKa = 3.56CLEE31 pKa = 4.22YY32 pKa = 10.63HH33 pKa = 7.12SPDD36 pKa = 3.44QLDD39 pKa = 3.87TFVDD43 pKa = 4.01MYY45 pKa = 10.52LTEE48 pKa = 4.6EE49 pKa = 4.64EE50 pKa = 4.66DD51 pKa = 4.04NEE53 pKa = 4.13LQKK56 pKa = 11.15EE57 pKa = 3.93IDD59 pKa = 3.52KK60 pKa = 11.26SEE62 pKa = 4.12KK63 pKa = 10.25FWDD66 pKa = 4.02EE67 pKa = 3.81VKK69 pKa = 10.72KK70 pKa = 10.62EE71 pKa = 3.92YY72 pKa = 10.5EE73 pKa = 4.18KK74 pKa = 11.0LWEE77 pKa = 4.02QEE79 pKa = 3.41MDD81 pKa = 4.24LEE83 pKa = 4.96LDD85 pKa = 3.71SYY87 pKa = 12.09ADD89 pKa = 3.52DD90 pKa = 3.81TRR92 pKa = 11.84DD93 pKa = 3.59YY94 pKa = 11.45LADD97 pKa = 3.89TLSMLYY103 pKa = 10.68EE104 pKa = 4.28NIIQNDD110 pKa = 4.09EE111 pKa = 4.3LSDD114 pKa = 3.46TCKK117 pKa = 10.5ARR119 pKa = 11.84RR120 pKa = 11.84LKK122 pKa = 10.68AYY124 pKa = 10.43AEE126 pKa = 4.05VLEE129 pKa = 4.39EE130 pKa = 4.46FGNAINRR137 pKa = 11.84ALKK140 pKa = 10.63DD141 pKa = 3.69GEE143 pKa = 4.42SLSDD147 pKa = 3.09IDD149 pKa = 4.65LDD151 pKa = 3.38YY152 pKa = 10.52WYY154 pKa = 10.89RR155 pKa = 11.84KK156 pKa = 9.74IGDD159 pKa = 3.27IAFGVKK165 pKa = 9.72NYY167 pKa = 10.56NYY169 pKa = 10.1YY170 pKa = 10.93DD171 pKa = 4.15EE172 pKa = 5.25IDD174 pKa = 3.84PYY176 pKa = 10.75IYY178 pKa = 10.86YY179 pKa = 9.8YY180 pKa = 11.49DD181 pKa = 3.72NMSKK185 pKa = 10.57NKK187 pKa = 9.79KK188 pKa = 10.38LEE190 pKa = 4.05VLSALLDD197 pKa = 4.36EE198 pKa = 5.36IGNVLYY204 pKa = 10.53DD205 pKa = 3.91IEE207 pKa = 5.23HH208 pKa = 7.23KK209 pKa = 10.92LPEE212 pKa = 4.93LEE214 pKa = 4.91GLTNNNSS221 pKa = 3.09

Molecular weight: 25.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0N9P4T9|A0A0N9P4T9_9VIRU Uncharacterized protein OS=Sulfolobus monocaudavirus SMV3 OX=1732177 PE=4 SV=1
MM1 pKa = 7.26KK2 pKa = 9.35RR3 pKa = 11.84TYY5 pKa = 10.14FLCKK9 pKa = 9.73FLEE12 pKa = 4.21EE13 pKa = 4.12NKK15 pKa = 9.78VFEE18 pKa = 4.75GKK20 pKa = 9.86FRR22 pKa = 11.84ACRR25 pKa = 11.84GYY27 pKa = 10.02IDD29 pKa = 3.76VGHH32 pKa = 5.98NVKK35 pKa = 10.21IGEE38 pKa = 4.17EE39 pKa = 3.9YY40 pKa = 10.57AGYY43 pKa = 10.07KK44 pKa = 9.23EE45 pKa = 5.63GYY47 pKa = 8.22ICSEE51 pKa = 3.89EE52 pKa = 4.32IIWKK56 pKa = 9.97KK57 pKa = 10.85DD58 pKa = 3.0GTLEE62 pKa = 3.9LRR64 pKa = 11.84RR65 pKa = 11.84RR66 pKa = 11.84KK67 pKa = 9.36LRR69 pKa = 11.84KK70 pKa = 8.15RR71 pKa = 11.84TLEE74 pKa = 3.55IVRR77 pKa = 11.84RR78 pKa = 11.84DD79 pKa = 2.99TDD81 pKa = 3.6LYY83 pKa = 11.18GEE85 pKa = 4.2LRR87 pKa = 11.84SRR89 pKa = 11.84RR90 pKa = 11.84HH91 pKa = 5.15IPKK94 pKa = 9.93GCRR97 pKa = 3.03

Molecular weight: 11.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

87

0

87

18332

42

1175

210.7

23.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.948 ± 0.276

0.556 ± 0.094

4.915 ± 0.332

7.195 ± 0.655

4.528 ± 0.224

4.92 ± 0.401

1.091 ± 0.114

8.166 ± 0.326

7.135 ± 0.534

9.923 ± 0.341

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.057 ± 0.139

5.924 ± 0.339

3.791 ± 0.267

4.309 ± 0.615

3.224 ± 0.255

7.206 ± 0.446

6.29 ± 0.363

6.895 ± 0.331

0.786 ± 0.118

5.122 ± 0.254
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski