Amino acid dipepetide frequency for Gorilla associated porprismacovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.254AlaAla: 5.254 ± 3.286
0.0AlaCys: 0.0 ± 0.0
7.005AlaAsp: 7.005 ± 1.791
0.0AlaGlu: 0.0 ± 0.0
3.503AlaPhe: 3.503 ± 2.191
3.503AlaGly: 3.503 ± 2.191
1.751AlaHis: 1.751 ± 1.494
3.503AlaIle: 3.503 ± 0.399
1.751AlaLys: 1.751 ± 1.095
0.0AlaLeu: 0.0 ± 0.0
1.751AlaMet: 1.751 ± 1.494
1.751AlaAsn: 1.751 ± 1.095
1.751AlaPro: 1.751 ± 1.095
3.503AlaGln: 3.503 ± 0.399
1.751AlaArg: 1.751 ± 1.095
7.005AlaSer: 7.005 ± 0.798
1.751AlaThr: 1.751 ± 1.095
7.005AlaVal: 7.005 ± 1.791
1.751AlaTrp: 1.751 ± 1.494
0.0AlaTyr: 0.0 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.751CysAla: 1.751 ± 1.494
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.751CysAsn: 1.751 ± 1.494
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
1.751CysArg: 1.751 ± 1.494
0.0CysSer: 0.0 ± 0.0
1.751CysThr: 1.751 ± 1.095
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.751AspAla: 1.751 ± 1.095
3.503AspCys: 3.503 ± 0.399
3.503AspAsp: 3.503 ± 0.399
1.751AspGlu: 1.751 ± 1.095
0.0AspPhe: 0.0 ± 0.0
7.005AspGly: 7.005 ± 1.791
1.751AspHis: 1.751 ± 1.494
1.751AspIle: 1.751 ± 1.494
1.751AspLys: 1.751 ± 1.494
5.254AspLeu: 5.254 ± 0.696
0.0AspMet: 0.0 ± 0.0
1.751AspAsn: 1.751 ± 1.494
8.757AspPro: 8.757 ± 0.297
5.254AspGln: 5.254 ± 3.286
5.254AspArg: 5.254 ± 1.894
1.751AspSer: 1.751 ± 1.095
8.757AspThr: 8.757 ± 4.882
5.254AspVal: 5.254 ± 0.696
0.0AspTrp: 0.0 ± 0.0
1.751AspTyr: 1.751 ± 1.095
0.0AspXaa: 0.0 ± 0.0
Glu
5.254GluAla: 5.254 ± 0.696
0.0GluCys: 0.0 ± 0.0
3.503GluAsp: 3.503 ± 2.191
1.751GluGlu: 1.751 ± 1.494
1.751GluPhe: 1.751 ± 1.494
0.0GluGly: 0.0 ± 0.0
0.0GluHis: 0.0 ± 0.0
1.751GluIle: 1.751 ± 1.494
1.751GluLys: 1.751 ± 1.494
3.503GluLeu: 3.503 ± 0.399
1.751GluMet: 1.751 ± 1.095
1.751GluAsn: 1.751 ± 1.095
0.0GluPro: 0.0 ± 0.0
1.751GluGln: 1.751 ± 1.095
3.503GluArg: 3.503 ± 2.989
1.751GluSer: 1.751 ± 1.095
3.503GluThr: 3.503 ± 2.989
5.254GluVal: 5.254 ± 0.696
3.503GluTrp: 3.503 ± 2.989
1.751GluTyr: 1.751 ± 1.494
0.0GluXaa: 0.0 ± 0.0
Phe
0.0PheAla: 0.0 ± 0.0
0.0PheCys: 0.0 ± 0.0
1.751PheAsp: 1.751 ± 1.095
0.0PheGlu: 0.0 ± 0.0
5.254PhePhe: 5.254 ± 0.696
1.751PheGly: 1.751 ± 1.494
0.0PheHis: 0.0 ± 0.0
1.751PheIle: 1.751 ± 1.494
7.005PheLys: 7.005 ± 1.791
0.0PheLeu: 0.0 ± 0.0
0.0PheMet: 0.0 ± 0.0
0.0PheAsn: 0.0 ± 0.0
3.503PhePro: 3.503 ± 2.191
5.254PheGln: 5.254 ± 0.696
1.751PheArg: 1.751 ± 1.095
3.503PheSer: 3.503 ± 0.399
1.751PheThr: 1.751 ± 1.095
3.503PheVal: 3.503 ± 2.191
0.0PheTrp: 0.0 ± 0.0
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
1.751GlyAla: 1.751 ± 1.095
0.0GlyCys: 0.0 ± 0.0
1.751GlyAsp: 1.751 ± 1.095
5.254GlyGlu: 5.254 ± 3.286
0.0GlyPhe: 0.0 ± 0.0
3.503GlyGly: 3.503 ± 2.191
3.503GlyHis: 3.503 ± 0.399
3.503GlyIle: 3.503 ± 2.989
3.503GlyLys: 3.503 ± 2.989
10.508GlyLeu: 10.508 ± 3.982
1.751GlyMet: 1.751 ± 1.494
3.503GlyAsn: 3.503 ± 2.989
3.503GlyPro: 3.503 ± 0.399
5.254GlyGln: 5.254 ± 0.696
3.503GlyArg: 3.503 ± 0.399
3.503GlySer: 3.503 ± 2.191
3.503GlyThr: 3.503 ± 2.191
7.005GlyVal: 7.005 ± 1.791
3.503GlyTrp: 3.503 ± 0.399
5.254GlyTyr: 5.254 ± 0.696
0.0GlyXaa: 0.0 ± 0.0
His
1.751HisAla: 1.751 ± 1.095
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.0HisGlu: 0.0 ± 0.0
0.0HisPhe: 0.0 ± 0.0
3.503HisGly: 3.503 ± 0.399
0.0HisHis: 0.0 ± 0.0
3.503HisIle: 3.503 ± 2.989
3.503HisLys: 3.503 ± 0.399
1.751HisLeu: 1.751 ± 1.494
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
0.0HisPro: 0.0 ± 0.0
3.503HisGln: 3.503 ± 2.191
1.751HisArg: 1.751 ± 1.095
0.0HisSer: 0.0 ± 0.0
0.0HisThr: 0.0 ± 0.0
0.0HisVal: 0.0 ± 0.0
1.751HisTrp: 1.751 ± 1.494
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
0.0IleAla: 0.0 ± 0.0
0.0IleCys: 0.0 ± 0.0
5.254IleAsp: 5.254 ± 0.696
3.503IleGlu: 3.503 ± 2.989
0.0IlePhe: 0.0 ± 0.0
1.751IleGly: 1.751 ± 1.095
0.0IleHis: 0.0 ± 0.0
1.751IleIle: 1.751 ± 1.494
3.503IleLys: 3.503 ± 2.989
0.0IleLeu: 0.0 ± 0.0
3.503IleMet: 3.503 ± 1.752
1.751IleAsn: 1.751 ± 1.494
5.254IlePro: 5.254 ± 0.696
3.503IleGln: 3.503 ± 2.989
3.503IleArg: 3.503 ± 2.989
0.0IleSer: 0.0 ± 0.0
7.005IleThr: 7.005 ± 1.791
8.757IleVal: 8.757 ± 4.882
0.0IleTrp: 0.0 ± 0.0
1.751IleTyr: 1.751 ± 1.494
0.0IleXaa: 0.0 ± 0.0
Lys
3.503LysAla: 3.503 ± 0.399
1.751LysCys: 1.751 ± 1.494
3.503LysAsp: 3.503 ± 2.989
3.503LysGlu: 3.503 ± 2.989
1.751LysPhe: 1.751 ± 1.095
5.254LysGly: 5.254 ± 1.894
0.0LysHis: 0.0 ± 0.0
0.0LysIle: 0.0 ± 0.0
1.751LysLys: 1.751 ± 1.494
5.254LysLeu: 5.254 ± 0.696
3.503LysMet: 3.503 ± 2.191
0.0LysAsn: 0.0 ± 0.0
0.0LysPro: 0.0 ± 0.0
1.751LysGln: 1.751 ± 1.494
3.503LysArg: 3.503 ± 2.191
7.005LysSer: 7.005 ± 0.798
7.005LysThr: 7.005 ± 3.388
3.503LysVal: 3.503 ± 0.399
7.005LysTrp: 7.005 ± 3.388
1.751LysTyr: 1.751 ± 1.095
0.0LysXaa: 0.0 ± 0.0
Leu
1.751LeuAla: 1.751 ± 1.095
0.0LeuCys: 0.0 ± 0.0
0.0LeuAsp: 0.0 ± 0.0
0.0LeuGlu: 0.0 ± 0.0
1.751LeuPhe: 1.751 ± 1.095
5.254LeuGly: 5.254 ± 0.696
3.503LeuHis: 3.503 ± 2.191
5.254LeuIle: 5.254 ± 1.894
3.503LeuLys: 3.503 ± 0.399
3.503LeuLeu: 3.503 ± 0.399
0.0LeuMet: 0.0 ± 0.965
1.751LeuAsn: 1.751 ± 1.494
7.005LeuPro: 7.005 ± 4.381
3.503LeuGln: 3.503 ± 2.191
1.751LeuArg: 1.751 ± 1.494
5.254LeuSer: 5.254 ± 0.696
10.508LeuThr: 10.508 ± 3.982
0.0LeuVal: 0.0 ± 0.0
0.0LeuTrp: 0.0 ± 0.0
7.005LeuTyr: 7.005 ± 0.798
0.0LeuXaa: 0.0 ± 0.0
Met
1.751MetAla: 1.751 ± 1.095
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
3.503MetGlu: 3.503 ± 0.399
1.751MetPhe: 1.751 ± 1.494
1.751MetGly: 1.751 ± 1.494
1.751MetHis: 1.751 ± 1.095
1.751MetIle: 1.751 ± 1.095
1.751MetLys: 1.751 ± 1.095
1.751MetLeu: 1.751 ± 1.494
1.751MetMet: 1.751 ± 1.095
0.0MetAsn: 0.0 ± 0.0
3.503MetPro: 3.503 ± 0.399
1.751MetGln: 1.751 ± 1.095
0.0MetArg: 0.0 ± 0.0
0.0MetSer: 0.0 ± 0.0
1.751MetThr: 1.751 ± 1.494
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
1.751MetTyr: 1.751 ± 1.095
1.751MetXaa: 1.751 ± 1.095
Asn
0.0AsnAla: 0.0 ± 0.0
0.0AsnCys: 0.0 ± 0.0
5.254AsnAsp: 5.254 ± 1.894
0.0AsnGlu: 0.0 ± 0.0
0.0AsnPhe: 0.0 ± 0.0
5.254AsnGly: 5.254 ± 1.894
1.751AsnHis: 1.751 ± 1.494
0.0AsnIle: 0.0 ± 0.0
1.751AsnLys: 1.751 ± 1.494
1.751AsnLeu: 1.751 ± 1.095
0.0AsnMet: 0.0 ± 0.0
1.751AsnAsn: 1.751 ± 1.494
0.0AsnPro: 0.0 ± 0.0
0.0AsnGln: 0.0 ± 0.0
0.0AsnArg: 0.0 ± 0.0
3.503AsnSer: 3.503 ± 0.399
7.005AsnThr: 7.005 ± 1.791
1.751AsnVal: 1.751 ± 1.095
1.751AsnTrp: 1.751 ± 1.494
3.503AsnTyr: 3.503 ± 2.191
0.0AsnXaa: 0.0 ± 0.0
Pro
5.254ProAla: 5.254 ± 3.286
0.0ProCys: 0.0 ± 0.0
0.0ProAsp: 0.0 ± 0.0
3.503ProGlu: 3.503 ± 0.399
3.503ProPhe: 3.503 ± 2.191
3.503ProGly: 3.503 ± 2.191
0.0ProHis: 0.0 ± 0.0
3.503ProIle: 3.503 ± 0.399
1.751ProLys: 1.751 ± 1.494
0.0ProLeu: 0.0 ± 0.0
3.503ProMet: 3.503 ± 2.191
1.751ProAsn: 1.751 ± 1.494
1.751ProPro: 1.751 ± 1.095
1.751ProGln: 1.751 ± 1.095
8.757ProArg: 8.757 ± 2.293
1.751ProSer: 1.751 ± 1.095
8.757ProThr: 8.757 ± 2.887
5.254ProVal: 5.254 ± 3.286
0.0ProTrp: 0.0 ± 0.0
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
7.005GlnAla: 7.005 ± 0.798
0.0GlnCys: 0.0 ± 0.0
7.005GlnAsp: 7.005 ± 3.388
0.0GlnGlu: 0.0 ± 0.0
1.751GlnPhe: 1.751 ± 1.095
0.0GlnGly: 0.0 ± 0.0
0.0GlnHis: 0.0 ± 0.0
5.254GlnIle: 5.254 ± 0.696
1.751GlnLys: 1.751 ± 1.095
8.757GlnLeu: 8.757 ± 2.887
0.0GlnMet: 0.0 ± 0.0
1.751GlnAsn: 1.751 ± 1.095
1.751GlnPro: 1.751 ± 1.095
1.751GlnGln: 1.751 ± 1.095
5.254GlnArg: 5.254 ± 0.696
1.751GlnSer: 1.751 ± 1.095
5.254GlnThr: 5.254 ± 0.696
3.503GlnVal: 3.503 ± 0.399
1.751GlnTrp: 1.751 ± 1.095
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.751ArgAla: 1.751 ± 1.494
0.0ArgCys: 0.0 ± 0.0
5.254ArgAsp: 5.254 ± 1.894
3.503ArgGlu: 3.503 ± 0.399
5.254ArgPhe: 5.254 ± 1.894
5.254ArgGly: 5.254 ± 0.696
1.751ArgHis: 1.751 ± 1.095
3.503ArgIle: 3.503 ± 0.399
7.005ArgLys: 7.005 ± 3.388
5.254ArgLeu: 5.254 ± 0.696
0.0ArgMet: 0.0 ± 0.0
1.751ArgAsn: 1.751 ± 1.095
3.503ArgPro: 3.503 ± 0.399
1.751ArgGln: 1.751 ± 1.494
1.751ArgArg: 1.751 ± 1.494
1.751ArgSer: 1.751 ± 1.095
3.503ArgThr: 3.503 ± 2.989
1.751ArgVal: 1.751 ± 1.095
3.503ArgTrp: 3.503 ± 0.399
3.503ArgTyr: 3.503 ± 0.399
0.0ArgXaa: 0.0 ± 0.0
Ser
5.254SerAla: 5.254 ± 0.696
0.0SerCys: 0.0 ± 0.0
7.005SerAsp: 7.005 ± 3.388
1.751SerGlu: 1.751 ± 1.494
0.0SerPhe: 0.0 ± 0.0
7.005SerGly: 7.005 ± 1.791
0.0SerHis: 0.0 ± 0.0
3.503SerIle: 3.503 ± 2.191
3.503SerLys: 3.503 ± 0.399
1.751SerLeu: 1.751 ± 1.095
1.751SerMet: 1.751 ± 1.095
1.751SerAsn: 1.751 ± 1.095
3.503SerPro: 3.503 ± 2.191
0.0SerGln: 0.0 ± 0.0
1.751SerArg: 1.751 ± 1.095
1.751SerSer: 1.751 ± 1.494
1.751SerThr: 1.751 ± 1.095
1.751SerVal: 1.751 ± 1.095
1.751SerTrp: 1.751 ± 1.494
1.751SerTyr: 1.751 ± 1.095
0.0SerXaa: 0.0 ± 0.0
Thr
1.751ThrAla: 1.751 ± 1.095
1.751ThrCys: 1.751 ± 1.494
7.005ThrAsp: 7.005 ± 4.381
3.503ThrGlu: 3.503 ± 0.399
1.751ThrPhe: 1.751 ± 1.494
10.508ThrGly: 10.508 ± 1.392
0.0ThrHis: 0.0 ± 0.0
3.503ThrIle: 3.503 ± 0.399
3.503ThrLys: 3.503 ± 2.191
1.751ThrLeu: 1.751 ± 1.095
1.751ThrMet: 1.751 ± 1.494
7.005ThrAsn: 7.005 ± 1.791
7.005ThrPro: 7.005 ± 1.791
1.751ThrGln: 1.751 ± 1.494
3.503ThrArg: 3.503 ± 0.399
7.005ThrSer: 7.005 ± 1.791
0.0ThrThr: 0.0 ± 0.0
14.011ThrVal: 14.011 ± 1.596
5.254ThrTrp: 5.254 ± 4.483
0.0ThrTyr: 0.0 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
7.005ValAla: 7.005 ± 0.798
0.0ValCys: 0.0 ± 0.0
3.503ValAsp: 3.503 ± 2.191
3.503ValGlu: 3.503 ± 0.399
3.503ValPhe: 3.503 ± 2.191
5.254ValGly: 5.254 ± 0.696
5.254ValHis: 5.254 ± 1.894
5.254ValIle: 5.254 ± 4.483
5.254ValLys: 5.254 ± 1.894
7.005ValLeu: 7.005 ± 1.791
0.0ValMet: 0.0 ± 0.0
3.503ValAsn: 3.503 ± 2.191
1.751ValPro: 1.751 ± 1.494
5.254ValGln: 5.254 ± 0.696
5.254ValArg: 5.254 ± 1.894
0.0ValSer: 0.0 ± 0.0
3.503ValThr: 3.503 ± 2.191
7.005ValVal: 7.005 ± 0.798
1.751ValTrp: 1.751 ± 1.494
7.005ValTyr: 7.005 ± 4.381
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
1.751TrpGlu: 1.751 ± 1.494
3.503TrpPhe: 3.503 ± 2.191
1.751TrpGly: 1.751 ± 1.494
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
1.751TrpLys: 1.751 ± 1.494
3.503TrpLeu: 3.503 ± 2.989
5.254TrpMet: 5.254 ± 1.894
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
5.254TrpGln: 5.254 ± 0.696
3.503TrpArg: 3.503 ± 2.989
0.0TrpSer: 0.0 ± 0.0
3.503TrpThr: 3.503 ± 2.989
3.503TrpVal: 3.503 ± 2.989
0.0TrpTrp: 0.0 ± 0.0
1.751TrpTyr: 1.751 ± 1.494
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.751TyrAla: 1.751 ± 1.095
0.0TyrCys: 0.0 ± 0.0
5.254TyrAsp: 5.254 ± 1.894
7.005TyrGlu: 7.005 ± 0.798
1.751TyrPhe: 1.751 ± 1.095
1.751TyrGly: 1.751 ± 1.095
0.0TyrHis: 0.0 ± 0.0
0.0TyrIle: 0.0 ± 0.0
5.254TyrLys: 5.254 ± 0.696
1.751TyrLeu: 1.751 ± 1.095
0.0TyrMet: 0.0 ± 0.0
1.751TyrAsn: 1.751 ± 1.494
1.751TyrPro: 1.751 ± 1.095
1.751TyrGln: 1.751 ± 1.095
3.503TyrArg: 3.503 ± 2.191
0.0TyrSer: 0.0 ± 0.0
1.751TyrThr: 1.751 ± 1.095
1.751TyrVal: 1.751 ± 1.494
1.751TyrTrp: 1.751 ± 1.095
5.254TyrTyr: 5.254 ± 3.286
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
1.751XaaIle: 1.751 ± 1.095
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (572 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski