Persimmon latent virus
Average proteome isoelectric point is 6.99
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>tr|R4X5Y4|R4X5Y4_9VIRU Proline-alanine-rich protein OS=Persimmon latent virus OX=1211481 PE=4 SV=1
MM1 pKa = 7.14 AQKK4 pKa = 9.71 TMATKK9 pKa = 10.83 AEE11 pKa = 4.41 LDD13 pKa = 3.75 PPVGSGEE20 pKa = 4.25 GAQTLAMQAGAMLGPSSEE38 pKa = 4.44 GPSPAAQSQGQQSGAHH54 pKa = 6.11 FEE56 pKa = 4.62 ASTCSPTDD64 pKa = 3.34 RR65 pKa = 11.84 TNSLSPGHH73 pKa = 6.85 PLLPRR78 pKa = 11.84 GVPVPAGGIQPHH90 pKa = 6.61 LAFMPHH96 pKa = 6.16 HH97 pKa = 7.13 AEE99 pKa = 4.04 RR100 pKa = 11.84 PQEE103 pKa = 3.9 VVRR106 pKa = 11.84 IRR108 pKa = 11.84 RR109 pKa = 11.84 RR110 pKa = 11.84 HH111 pKa = 4.94 GRR113 pKa = 11.84 SLSPPSSGRR122 pKa = 11.84 FGGEE126 pKa = 3.74 PAPGPSPRR134 pKa = 11.84 APQGTAPRR142 pKa = 11.84 RR143 pKa = 11.84 GPKK146 pKa = 9.72 SRR148 pKa = 11.84 AHH150 pKa = 5.36 YY151 pKa = 9.59 AARR154 pKa = 11.84 PQGSPSRR161 pKa = 11.84 EE162 pKa = 3.98 GGEE165 pKa = 4.24 GGVDD169 pKa = 3.25 ASVVGVGQIRR179 pKa = 11.84 ADD181 pKa = 3.78 TVNGARR187 pKa = 11.84 ANLLPPEE194 pKa = 4.28 DD195 pKa = 3.74 VPRR198 pKa = 11.84 NEE200 pKa = 4.4 ASPVLTPLHH209 pKa = 6.41 EE210 pKa = 4.81 SPPRR214 pKa = 11.84 TPSPPVLSEE223 pKa = 3.84 SQQYY227 pKa = 10.31 AIHH230 pKa = 6.86 EE231 pKa = 4.46 GFVWVRR237 pKa = 11.84 DD238 pKa = 3.68 LSPSSGSDD246 pKa = 2.9 SDD248 pKa = 3.91 VLLVSEE254 pKa = 4.71 SDD256 pKa = 3.4 LPKK259 pKa = 10.8 YY260 pKa = 10.23 EE261 pKa = 4.17 GEE263 pKa = 3.85 LRR265 pKa = 11.84 SRR267 pKa = 11.84 LEE269 pKa = 3.64 QACRR273 pKa = 11.84 VATIYY278 pKa = 10.46 RR279 pKa = 11.84 RR280 pKa = 11.84 NVLGMTEE287 pKa = 3.62 EE288 pKa = 4.39 SEE290 pKa = 4.17 RR291 pKa = 11.84 QKK293 pKa = 10.87 IDD295 pKa = 3.24 IPYY298 pKa = 9.6 LPCPHH303 pKa = 6.43 GRR305 pKa = 11.84 VALPLHH311 pKa = 6.57 SEE313 pKa = 4.29 GQEE316 pKa = 3.97 EE317 pKa = 5.1 LPPCAPSSPPAPSSSDD333 pKa = 3.36 SEE335 pKa = 4.12 NSSEE339 pKa = 4.11 EE340 pKa = 3.83 EE341 pKa = 3.72 RR342 pKa = 11.84 RR343 pKa = 11.84 SARR346 pKa = 11.84 SARR349 pKa = 11.84 RR350 pKa = 11.84 LNPSTPRR357 pKa = 11.84 SGLIDD362 pKa = 3.08 QRR364 pKa = 11.84 YY365 pKa = 4.94 TVKK368 pKa = 10.88 FGDD371 pKa = 4.04 HH372 pKa = 6.94 SIHH375 pKa = 6.35 TSDD378 pKa = 4.3 VSPDD382 pKa = 3.89 PIYY385 pKa = 10.64 SIRR388 pKa = 11.84 TIDD391 pKa = 3.58 GVSDD395 pKa = 3.91 FFSRR399 pKa = 11.84 GLQFVEE405 pKa = 4.07 TMYY408 pKa = 11.42 DD409 pKa = 3.36 SFDD412 pKa = 3.5 VDD414 pKa = 3.0 AHH416 pKa = 6.16 SIRR419 pKa = 11.84 VTSQLVCADD428 pKa = 3.42 QPLCVSQAFPVRR440 pKa = 11.84 GEE442 pKa = 4.13 AFHH445 pKa = 5.92 SHH447 pKa = 5.11 NRR449 pKa = 11.84 NFTIADD455 pKa = 3.3 TTMAVVNFGPTRR467 pKa = 11.84 VKK469 pKa = 10.94 GRR471 pKa = 11.84 IDD473 pKa = 3.75 DD474 pKa = 4.66 ALLTPYY480 pKa = 10.06 MIGGVPNSRR489 pKa = 11.84 SVSSAITPEE498 pKa = 3.7 LRR500 pKa = 11.84 PANRR504 pKa = 11.84 NLILEE509 pKa = 4.59 SASVMQSNLTYY520 pKa = 10.26 YY521 pKa = 10.54 DD522 pKa = 3.39 NSMLYY527 pKa = 10.7 AKK529 pKa = 9.53 LIWNALLIDD538 pKa = 4.22 VYY540 pKa = 11.42 AHH542 pKa = 6.19 VGLVPAVIPFEE553 pKa = 4.34 AEE555 pKa = 4.12 RR556 pKa = 11.84 SVSWINLDD564 pKa = 3.77 DD565 pKa = 4.9 ANLAVPALTVEE576 pKa = 4.57 FAKK579 pKa = 10.85 GSIMLLQDD587 pKa = 3.27 RR588 pKa = 11.84 DD589 pKa = 3.68 FTTAEE594 pKa = 3.95 LQEE597 pKa = 4.3 VQWLSVFGRR606 pKa = 11.84 RR607 pKa = 11.84 FLAPANGPTPVSSYY621 pKa = 10.21 VNWPRR626 pKa = 11.84 VPICLLAHH634 pKa = 6.91 GAQPAALPACAMLTSARR651 pKa = 11.84 LLSFCAKK658 pKa = 9.97 LAASRR663 pKa = 11.84 GEE665 pKa = 4.0 WEE667 pKa = 4.53 DD668 pKa = 3.83 CLKK671 pKa = 10.81 GAYY674 pKa = 9.86 LAMDD678 pKa = 3.9 VLGTDD683 pKa = 3.66 YY684 pKa = 11.37 NITDD688 pKa = 3.27 NHH690 pKa = 6.94 AYY692 pKa = 8.95 PMNVFLGLEE701 pKa = 4.19 NLRR704 pKa = 11.84 VPAPSDD710 pKa = 3.41 YY711 pKa = 11.6 NFFCRR716 pKa = 11.84 LLGLCPPADD725 pKa = 3.36 VARR728 pKa = 11.84 RR729 pKa = 11.84 DD730 pKa = 3.65 EE731 pKa = 4.71 FFSLMAASSANRR743 pKa = 11.84 VRR745 pKa = 11.84 GVSLYY750 pKa = 8.94 VASMRR755 pKa = 11.84 TFSTTTLHH763 pKa = 6.33 SLSIGTGNLVDD774 pKa = 3.77 WCTGAIPQGGVNMVLQSGIVNPQGDD799 pKa = 4.83 YY800 pKa = 9.32 NTEE803 pKa = 3.56 SAMFEE808 pKa = 4.08 KK809 pKa = 10.51 PKK811 pKa = 10.67 AAFEE815 pKa = 4.19 RR816 pKa = 11.84 FLGFRR821 pKa = 11.84 IEE823 pKa = 3.98 KK824 pKa = 10.31 GFYY827 pKa = 10.14 AGSNWMPACGSLAAALSYY845 pKa = 9.81 YY846 pKa = 10.74 SPLISEE852 pKa = 4.98 ADD854 pKa = 3.34 APPRR858 pKa = 11.84 KK859 pKa = 9.4 HH860 pKa = 6.3 SCLAIDD866 pKa = 5.22 DD867 pKa = 4.27 FLLMRR872 pKa = 11.84 PQEE875 pKa = 4.01 WGVLGGTTQIDD886 pKa = 3.33 FHH888 pKa = 7.71 QDD890 pKa = 2.58 LVAFSTPEE898 pKa = 3.61 NRR900 pKa = 11.84 GVFSDD905 pKa = 4.77 RR906 pKa = 11.84 GDD908 pKa = 2.99 ATYY911 pKa = 10.42 RR912 pKa = 11.84 QRR914 pKa = 11.84 LTSPTPYY921 pKa = 10.53 LFVPYY926 pKa = 10.41 GIQLLNAVCQHH937 pKa = 6.02 FEE939 pKa = 4.12 VAEE942 pKa = 3.99 HH943 pKa = 5.21 VPYY946 pKa = 10.9 YY947 pKa = 10.5 RR948 pKa = 11.84 GAVYY952 pKa = 10.72 NGGAEE957 pKa = 4.4 SSFSTTPARR966 pKa = 11.84 FPSSAWIEE974 pKa = 4.09 DD975 pKa = 3.15 LSMFEE980 pKa = 4.29 PCALTSFSWIDD991 pKa = 3.14 HH992 pKa = 5.12 TVRR995 pKa = 11.84 APCMVGAVRR1004 pKa = 11.84 MTASMLRR1011 pKa = 11.84 ALQMWRR1017 pKa = 11.84 GATIPKK1023 pKa = 8.76 TGCPLARR1030 pKa = 11.84 IPGFALQGLAPPPFAGMGGLGAIGGVVGGGAADD1063 pKa = 4.36 GADD1066 pKa = 3.75 TPNQPSGNGG1075 pKa = 3.22
Molecular weight: 115.7 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 5.708
IPC2_protein 5.677
IPC_protein 5.728
Toseland 6.097
ProMoST 6.084
Dawson 5.995
Bjellqvist 6.008
Wikipedia 5.995
Rodwell 5.97
Grimsley 6.237
Solomon 5.995
Lehninger 5.982
Nozaki 6.262
DTASelect 6.44
Thurlkill 6.453
EMBOSS 6.415
Sillero 6.351
Patrickios 4.037
IPC_peptide 6.008
IPC2_peptide 6.376
IPC2.peptide.svr19 6.25
Protein with the highest isoelectric point:
>tr|R4X5Y4|R4X5Y4_9VIRU Proline-alanine-rich protein OS=Persimmon latent virus OX=1211481 PE=4 SV=1
RR1 pKa = 8.7 VEE3 pKa = 4.0 LTTVGRR9 pKa = 11.84 DD10 pKa = 3.25 VGSVWSCPPKK20 pKa = 10.57 LNPYY24 pKa = 9.53 PDD26 pKa = 3.6 YY27 pKa = 10.92 TLGRR31 pKa = 11.84 GDD33 pKa = 3.38 NVIRR37 pKa = 11.84 IKK39 pKa = 11.04 DD40 pKa = 3.64 RR41 pKa = 11.84 LSSFIISDD49 pKa = 3.53 ILNCAMRR56 pKa = 11.84 AHH58 pKa = 6.7 GVGSSRR64 pKa = 11.84 VVVEE68 pKa = 4.88 VKK70 pKa = 9.9 HH71 pKa = 6.18 HH72 pKa = 7.11 PYY74 pKa = 11.38 NMDD77 pKa = 3.06 HH78 pKa = 7.22 PYY80 pKa = 10.96 DD81 pKa = 4.12 VIMTATPDD89 pKa = 3.86 VRR91 pKa = 11.84 GQDD94 pKa = 4.07 CLVKK98 pKa = 10.49 CQNAVLTAIRR108 pKa = 11.84 KK109 pKa = 6.03 ATNSAHH115 pKa = 6.51 LQTCVEE121 pKa = 4.67 DD122 pKa = 3.86 EE123 pKa = 4.31 VLDD126 pKa = 4.55 YY127 pKa = 9.98 MFPDD131 pKa = 3.71 YY132 pKa = 10.63 NRR134 pKa = 11.84 CVTRR138 pKa = 11.84 PSIARR143 pKa = 11.84 AYY145 pKa = 9.13 AGSVAKK151 pKa = 10.65 VLTDD155 pKa = 4.09 IEE157 pKa = 5.28 DD158 pKa = 3.61 NPADD162 pKa = 3.87 KK163 pKa = 10.96 KK164 pKa = 10.16 PTISLALAAILAPEE178 pKa = 3.88 FHH180 pKa = 6.8 GGIGVYY186 pKa = 9.5 INHH189 pKa = 5.94 MTTLCGNWTGLVKK202 pKa = 10.7 AVDD205 pKa = 4.32 LLHH208 pKa = 6.89 ARR210 pKa = 11.84 AIMQHH215 pKa = 6.03 HH216 pKa = 6.33 FQDD219 pKa = 3.59 AGKK222 pKa = 10.8 GGAEE226 pKa = 4.06 DD227 pKa = 3.42 SAGIGLAGLVRR238 pKa = 11.84 EE239 pKa = 4.64 LFLVYY244 pKa = 10.22 SGCGQTGFFWPDD256 pKa = 2.69 VGQDD260 pKa = 3.2 ATSLEE265 pKa = 4.86 EE266 pKa = 3.78 IRR268 pKa = 11.84 TMLSIRR274 pKa = 11.84 IKK276 pKa = 11.0 LSDD279 pKa = 3.21 RR280 pKa = 11.84 WADD283 pKa = 3.6 LLAPVIWAIMLSSRR297 pKa = 11.84 RR298 pKa = 11.84 GGGDD302 pKa = 2.88 AVKK305 pKa = 11.0 AEE307 pKa = 4.29 FPHH310 pKa = 7.26 LASLLNKK317 pKa = 9.87 ASEE320 pKa = 4.28 VMKK323 pKa = 10.7 RR324 pKa = 11.84 LGPFEE329 pKa = 5.81 LMVKK333 pKa = 10.44 LGSDD337 pKa = 3.08 LHH339 pKa = 6.09 EE340 pKa = 6.1 RR341 pKa = 11.84 DD342 pKa = 3.77 MVADD346 pKa = 4.02 PASFDD351 pKa = 3.42 YY352 pKa = 10.61 ACRR355 pKa = 11.84 VRR357 pKa = 11.84 RR358 pKa = 11.84 HH359 pKa = 5.17 VSWVCVNIKK368 pKa = 9.96 AAPTRR373 pKa = 11.84 AQAKK377 pKa = 9.44 SIHH380 pKa = 6.51 KK381 pKa = 9.06 LFPPTSATDD390 pKa = 3.28 ARR392 pKa = 11.84 HH393 pKa = 4.82 ATTRR397 pKa = 11.84 PDD399 pKa = 3.16 ALLWHH404 pKa = 6.67 YY405 pKa = 10.9 ISGPTCYY412 pKa = 10.03 QDD414 pKa = 4.74 LDD416 pKa = 3.77 PNMRR420 pKa = 11.84 SVASIQARR428 pKa = 11.84 VSAAKK433 pKa = 9.43 TLFRR437 pKa = 11.84 HH438 pKa = 6.05 IPVGTNGTLVSMMLLSALCTSNGDD462 pKa = 3.43 VVMNNYY468 pKa = 9.06 IVNNALVRR476 pKa = 11.84 SGNSQKK482 pKa = 11.08 KK483 pKa = 9.4 LLKK486 pKa = 10.37 ACSTFIRR493 pKa = 11.84 KK494 pKa = 9.24 SSCDD498 pKa = 3.32 LTQTKK503 pKa = 9.43 VRR505 pKa = 11.84 AEE507 pKa = 4.06 DD508 pKa = 3.73 VAVLTYY514 pKa = 10.49 FDD516 pKa = 4.65 LGFGRR521 pKa = 11.84 SMNRR525 pKa = 11.84 SDD527 pKa = 3.31 WQEE530 pKa = 4.06 EE531 pKa = 3.48 IDD533 pKa = 3.45 NRR535 pKa = 11.84 GFRR538 pKa = 11.84 KK539 pKa = 9.34 HH540 pKa = 6.51 HH541 pKa = 5.79 IQHH544 pKa = 6.41 PRR546 pKa = 11.84 APNVSKK552 pKa = 11.13 ALVSEE557 pKa = 4.59 LKK559 pKa = 9.78 TVAFGDD565 pKa = 3.63 NTLPDD570 pKa = 4.07 PKK572 pKa = 10.48 FEE574 pKa = 3.96 QAIRR578 pKa = 11.84 AKK580 pKa = 10.59 LAGYY584 pKa = 8.99 CRR586 pKa = 11.84 KK587 pKa = 9.85 LVLGKK592 pKa = 8.6 KK593 pKa = 7.83 TKK595 pKa = 8.4 EE596 pKa = 3.88 TMARR600 pKa = 11.84 FYY602 pKa = 10.83 RR603 pKa = 11.84 RR604 pKa = 11.84 RR605 pKa = 11.84 NDD607 pKa = 2.57 WMASGSSGGYY617 pKa = 9.02 KK618 pKa = 10.01 SKK620 pKa = 9.67 TMGEE624 pKa = 4.49 LINGEE629 pKa = 4.07 GAGPISVDD637 pKa = 2.8 KK638 pKa = 10.9 RR639 pKa = 11.84 VWAEE643 pKa = 3.54 EE644 pKa = 3.81 HH645 pKa = 6.62 DD646 pKa = 4.22 FKK648 pKa = 11.43 HH649 pKa = 6.02 ILRR652 pKa = 11.84 YY653 pKa = 8.82 MRR655 pKa = 11.84 SAPKK659 pKa = 9.69 EE660 pKa = 3.58 LARR663 pKa = 11.84 ASEE666 pKa = 4.41 KK667 pKa = 11.16 YY668 pKa = 10.5 EE669 pKa = 3.97 NGKK672 pKa = 9.72 SRR674 pKa = 11.84 AIYY677 pKa = 9.76 GVAPEE682 pKa = 4.58 HH683 pKa = 5.96 YY684 pKa = 10.42 VINTYY689 pKa = 7.68 VTQGMEE695 pKa = 4.13 EE696 pKa = 4.1 RR697 pKa = 11.84 LHH699 pKa = 6.54 NIPGLEE705 pKa = 3.93 KK706 pKa = 10.45 GATGVTEE713 pKa = 4.16 LGYY716 pKa = 10.2 IKK718 pKa = 10.25 KK719 pKa = 10.14 RR720 pKa = 11.84 CNITANARR728 pKa = 11.84 KK729 pKa = 8.98 EE730 pKa = 4.19 CTMLDD735 pKa = 3.55 YY736 pKa = 11.62 ADD738 pKa = 5.36 FNVQHH743 pKa = 6.63 SLSCQYY749 pKa = 11.28 ILFDD753 pKa = 3.9 EE754 pKa = 4.25 MLKK757 pKa = 10.95 AGVEE761 pKa = 4.31 VGACPDD767 pKa = 3.25 WVKK770 pKa = 10.94 ACSWLRR776 pKa = 11.84 DD777 pKa = 3.21 AKK779 pKa = 10.77 LNQEE783 pKa = 4.34 SYY785 pKa = 11.13 FPGKK789 pKa = 9.95 SRR791 pKa = 11.84 PVKK794 pKa = 8.79 ITQGMFSGTRR804 pKa = 11.84 STDD807 pKa = 4.15 LINTLLNLAYY817 pKa = 10.86 YY818 pKa = 9.39 EE819 pKa = 4.28 VAADD823 pKa = 3.66 AVSSYY828 pKa = 10.87 GYY830 pKa = 10.3 SSQDD834 pKa = 2.92 VYY836 pKa = 11.07 HH837 pKa = 5.87 VHH839 pKa = 6.6 QGDD842 pKa = 4.26 DD843 pKa = 3.19 VWLSSDD849 pKa = 3.24 NAAWAATLYY858 pKa = 11.05 YY859 pKa = 10.94 VMNAQGFIFQDD870 pKa = 3.56 SKK872 pKa = 11.95 QMFGPSRR879 pKa = 11.84 GEE881 pKa = 3.82 YY882 pKa = 10.53 LRR884 pKa = 11.84 VLYY887 pKa = 10.4 HH888 pKa = 6.39 SEE890 pKa = 3.89 GAVGYY895 pKa = 8.93 LARR898 pKa = 11.84 SLANYY903 pKa = 7.97 LQRR906 pKa = 11.84 PIQNKK911 pKa = 8.35 TDD913 pKa = 3.11 IGGQAWMEE921 pKa = 4.62 SISDD925 pKa = 3.76 TCRR928 pKa = 11.84 VMQRR932 pKa = 11.84 RR933 pKa = 11.84 GLSIYY938 pKa = 9.48 GASVVWQDD946 pKa = 3.14 VLGAKK951 pKa = 8.36 GTVHH955 pKa = 6.11 LHH957 pKa = 4.91 EE958 pKa = 5.56 RR959 pKa = 11.84 DD960 pKa = 3.25 RR961 pKa = 11.84 AKK963 pKa = 10.52 IKK965 pKa = 10.88 LPLSYY970 pKa = 10.13 IVAPRR975 pKa = 11.84 EE976 pKa = 4.09 AGGMGCPPPGHH987 pKa = 7.22 LVQASLLPPAPTDD1000 pKa = 3.55 QLSWKK1005 pKa = 9.42 ADD1007 pKa = 3.19 WSALPHH1013 pKa = 6.84 RR1014 pKa = 11.84 MADD1017 pKa = 3.13 DD1018 pKa = 4.44 WIEE1021 pKa = 4.08 HH1022 pKa = 5.74 VSSIAHH1028 pKa = 6.06 SLHH1031 pKa = 6.03 KK1032 pKa = 10.92 VSINAPALRR1041 pKa = 11.84 EE1042 pKa = 4.2 NIKK1045 pKa = 8.91 HH1046 pKa = 4.94 TTHH1049 pKa = 6.3 EE1050 pKa = 5.13 PILASHH1056 pKa = 6.71 GLARR1060 pKa = 11.84 HH1061 pKa = 4.69 NKK1063 pKa = 7.9 KK1064 pKa = 9.46 WKK1066 pKa = 8.61 EE1067 pKa = 3.64 QWSSYY1072 pKa = 9.88 RR1073 pKa = 11.84 KK1074 pKa = 7.81 TLASPNNVVTYY1085 pKa = 10.77 SPTPNLQSMRR1095 pKa = 11.84 SSLSTVIPKK1104 pKa = 10.07 KK1105 pKa = 10.8 GNLIAGGSLDD1115 pKa = 5.19 YY1116 pKa = 9.68 ITKK1119 pKa = 10.25 PIDD1122 pKa = 3.63 CNTNSPGSAGLLLNFSEE1139 pKa = 5.01 TINKK1143 pKa = 9.41 YY1144 pKa = 7.42 VTQSTFKK1151 pKa = 9.03 STSRR1155 pKa = 11.84 TSIALGLSKK1164 pKa = 9.3 TAAMTFILRR1173 pKa = 11.84 EE1174 pKa = 3.77 AVEE1177 pKa = 4.07 YY1178 pKa = 11.07 SRR1180 pKa = 11.84 ANADD1184 pKa = 3.79 LVSLATQLIKK1194 pKa = 10.79 YY1195 pKa = 8.98 GKK1197 pKa = 10.27 ADD1199 pKa = 3.46 WLDD1202 pKa = 3.54 LLLAGGSSILTPLAQFMDD1220 pKa = 3.94 GKK1222 pKa = 10.09 FVNVFGSLLHH1232 pKa = 6.37 QILISASVGKK1242 pKa = 10.25 EE1243 pKa = 3.13 IGSVYY1248 pKa = 10.74 EE1249 pKa = 5.03 VMATHH1254 pKa = 6.6 NNYY1257 pKa = 9.24 INKK1260 pKa = 9.07 YY1261 pKa = 7.9 VQALSDD1267 pKa = 3.74 CRR1269 pKa = 11.84 YY1270 pKa = 10.3 APQTMLYY1277 pKa = 10.38
Molecular weight: 141.26 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 8.263
IPC2_protein 8.287
IPC_protein 8.097
Toseland 8.317
ProMoST 8.726
Dawson 8.96
Bjellqvist 9.048
Wikipedia 9.048
Rodwell 9.048
Grimsley 8.595
Solomon 8.99
Lehninger 8.975
Nozaki 9.165
DTASelect 8.873
Thurlkill 8.946
EMBOSS 9.107
Sillero 9.18
Patrickios 4.38
IPC_peptide 8.99
IPC2_peptide 7.863
IPC2.peptide.svr19 7.823
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
2
0
2
2352
1075
1277
1176.0
128.48
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
9.694 ± 0.293
1.828 ± 0.04
5.06 ± 0.268
4.422 ± 0.334
3.189 ± 0.472
7.611 ± 0.5
2.806 ± 0.316
4.422 ± 0.583
3.741 ± 1.48
8.844 ± 0.249
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
2.636 ± 0.082
3.869 ± 0.342
6.548 ± 1.687
3.359 ± 0.177
6.25 ± 0.355
8.886 ± 0.518
5.23 ± 0.197
6.803 ± 0.13
1.446 ± 0.216
3.359 ± 0.434
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here