Torque teno virus 28

Taxonomy: Viruses; Anelloviridae; Alphatorquevirus

Average proteome isoelectric point is 7.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8V7I1|Q8V7I1_9VIRU Capsid protein OS=Torque teno virus 28 OX=687367 PE=3 SV=1
MM1 pKa = 7.33SWRR4 pKa = 11.84PPAYY8 pKa = 10.19NLAQRR13 pKa = 11.84EE14 pKa = 4.27EE15 pKa = 4.03HH16 pKa = 6.36WYY18 pKa = 10.05KK19 pKa = 11.02AILEE23 pKa = 4.29SHH25 pKa = 5.85STFCGCSDD33 pKa = 3.83VVRR36 pKa = 11.84HH37 pKa = 5.51FCVLASRR44 pKa = 11.84LATNPSVIPALPAPPEE60 pKa = 3.94QQPRR64 pKa = 11.84PGGDD68 pKa = 3.09TEE70 pKa = 4.61GAPGDD75 pKa = 4.46PGDD78 pKa = 4.48AGAGRR83 pKa = 11.84YY84 pKa = 9.19AEE86 pKa = 4.5EE87 pKa = 4.4DD88 pKa = 3.66LEE90 pKa = 4.37EE91 pKa = 4.54LFAAAAKK98 pKa = 10.76DD99 pKa = 3.78DD100 pKa = 3.79MM101 pKa = 6.43

Molecular weight: 10.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8V7I3|Q8V7I3_9VIRU Uncharacterized protein OS=Torque teno virus 28 OX=687367 PE=4 SV=1
MM1 pKa = 7.33SWRR4 pKa = 11.84PPAYY8 pKa = 10.19NLAQRR13 pKa = 11.84EE14 pKa = 4.27EE15 pKa = 4.03HH16 pKa = 6.36WYY18 pKa = 10.05KK19 pKa = 11.02AILEE23 pKa = 4.29SHH25 pKa = 5.85STFCGCSDD33 pKa = 3.83VVRR36 pKa = 11.84HH37 pKa = 5.51FCVLASRR44 pKa = 11.84LATNPSVIPALPAPPEE60 pKa = 3.94QQPRR64 pKa = 11.84PGGDD68 pKa = 3.09TEE70 pKa = 4.61GAPGDD75 pKa = 4.46PGDD78 pKa = 4.48AGAGRR83 pKa = 11.84YY84 pKa = 9.19AEE86 pKa = 4.5EE87 pKa = 4.4DD88 pKa = 3.66LEE90 pKa = 4.37EE91 pKa = 4.54LFAAAAKK98 pKa = 10.66DD99 pKa = 3.58DD100 pKa = 3.62MRR102 pKa = 11.84RR103 pKa = 11.84VQKK106 pKa = 9.49TPNGNPVRR114 pKa = 11.84GSHH117 pKa = 6.1RR118 pKa = 11.84KK119 pKa = 7.58PRR121 pKa = 11.84RR122 pKa = 11.84RR123 pKa = 11.84RR124 pKa = 11.84LLFTQSTPKK133 pKa = 10.18RR134 pKa = 11.84ARR136 pKa = 11.84EE137 pKa = 3.75QPVRR141 pKa = 11.84RR142 pKa = 11.84RR143 pKa = 11.84DD144 pKa = 3.2SPRR147 pKa = 11.84RR148 pKa = 11.84GDD150 pKa = 3.53PKK152 pKa = 10.57TATTQAAQPAATAAASPQRR171 pKa = 11.84GTQTSPGRR179 pKa = 11.84RR180 pKa = 11.84PPTPEE185 pKa = 4.17RR186 pKa = 11.84SPLGPPPIIIQGDD199 pKa = 4.68PIPDD203 pKa = 3.78LLFPSTGKK211 pKa = 9.8KK212 pKa = 9.82RR213 pKa = 11.84KK214 pKa = 8.94FSKK217 pKa = 10.58FDD219 pKa = 3.19WEE221 pKa = 4.34TEE223 pKa = 3.97AEE225 pKa = 3.77IGRR228 pKa = 11.84WLRR231 pKa = 11.84RR232 pKa = 11.84PMRR235 pKa = 11.84FYY237 pKa = 10.66PSDD240 pKa = 3.84PPHH243 pKa = 6.43YY244 pKa = 9.4PWLPPKK250 pKa = 10.23RR251 pKa = 11.84DD252 pKa = 3.07IPKK255 pKa = 8.76ICKK258 pKa = 9.96VNFKK262 pKa = 10.86INFTEE267 pKa = 3.93

Molecular weight: 29.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1379

101

734

344.8

39.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.454 ± 1.981

1.668 ± 0.249

4.569 ± 0.446

5.511 ± 0.543

3.191 ± 0.536

5.656 ± 0.523

2.103 ± 0.116

3.481 ± 0.491

6.454 ± 0.758

7.034 ± 1.014

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.74 ± 0.426

4.206 ± 0.749

9.065 ± 1.942

4.714 ± 0.312

8.92 ± 1.147

7.977 ± 2.114

6.454 ± 0.479

3.626 ± 0.448

2.538 ± 0.409

4.641 ± 1.271
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski