Bhendi yellow vein Delhi virus [2004:New Delhi]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; unclassified Begomovirus; Bhendi yellow vein Delhi virus

Average proteome isoelectric point is 7.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B8YB85|B8YB85_9GEMI AC4 OS=Bhendi yellow vein Delhi virus [2004:New Delhi] OX=587620 GN=AC4 PE=3 SV=1
MM1 pKa = 7.68APPSRR6 pKa = 11.84FRR8 pKa = 11.84INAKK12 pKa = 10.3NYY14 pKa = 8.19FLTYY18 pKa = 9.06PKK20 pKa = 10.53CSLTKK25 pKa = 10.69EE26 pKa = 4.09EE27 pKa = 5.55ALSQLQNLQTPTNKK41 pKa = 9.87KK42 pKa = 9.42FIKK45 pKa = 9.65ICRR48 pKa = 11.84EE49 pKa = 3.52LHH51 pKa = 6.26EE52 pKa = 4.93NGEE55 pKa = 4.28PHH57 pKa = 6.66LHH59 pKa = 6.03VLIQFEE65 pKa = 4.78GKK67 pKa = 9.95YY68 pKa = 9.77KK69 pKa = 10.46CQNQRR74 pKa = 11.84FFDD77 pKa = 3.97LVSPSRR83 pKa = 11.84SVHH86 pKa = 4.99FHH88 pKa = 6.71PNIQGAKK95 pKa = 9.25SSSDD99 pKa = 3.11VKK101 pKa = 11.24SYY103 pKa = 10.79IDD105 pKa = 3.7KK106 pKa = 11.33DD107 pKa = 3.49GDD109 pKa = 3.67TLEE112 pKa = 4.14WGEE115 pKa = 3.84FQIDD119 pKa = 3.21GRR121 pKa = 11.84SARR124 pKa = 11.84GGQQTANDD132 pKa = 4.05AYY134 pKa = 10.69AAALNAGSKK143 pKa = 10.33SEE145 pKa = 3.85ALKK148 pKa = 10.64VIRR151 pKa = 11.84EE152 pKa = 4.37LAPKK156 pKa = 10.23DD157 pKa = 3.59YY158 pKa = 11.19VLQFHH163 pKa = 6.76NLNANLDD170 pKa = 4.3RR171 pKa = 11.84IFTPPLEE178 pKa = 4.56VYY180 pKa = 10.28VSPFSSSSFDD190 pKa = 3.41QVPEE194 pKa = 3.95EE195 pKa = 4.04LEE197 pKa = 3.96EE198 pKa = 4.17WVSEE202 pKa = 4.2NVVDD206 pKa = 4.8AAARR210 pKa = 11.84PLRR213 pKa = 11.84PLSLVLEE220 pKa = 4.7GDD222 pKa = 3.46SRR224 pKa = 11.84TGKK227 pKa = 8.52TMWARR232 pKa = 11.84SLGPHH237 pKa = 6.71NYY239 pKa = 10.18LCGHH243 pKa = 7.38LDD245 pKa = 4.18LSPKK249 pKa = 10.15VYY251 pKa = 11.07SNDD254 pKa = 2.25AWYY257 pKa = 10.92NVIDD261 pKa = 4.79DD262 pKa = 4.33VDD264 pKa = 3.73PHH266 pKa = 6.08FLKK269 pKa = 10.67HH270 pKa = 5.9FKK272 pKa = 10.69EE273 pKa = 4.43FMGAQRR279 pKa = 11.84DD280 pKa = 3.81WQSNTKK286 pKa = 9.6YY287 pKa = 10.57GKK289 pKa = 9.12PVQIKK294 pKa = 10.41GGIPTIFLCNPGPNSCYY311 pKa = 10.3KK312 pKa = 10.59EE313 pKa = 3.94FLDD316 pKa = 4.84EE317 pKa = 4.5EE318 pKa = 4.61KK319 pKa = 11.18NSALKK324 pKa = 10.53NWALKK329 pKa = 10.11NAIFITLAEE338 pKa = 4.23PLYY341 pKa = 11.11SGANQSTAQGSQEE354 pKa = 3.75TDD356 pKa = 3.09QEE358 pKa = 4.42EE359 pKa = 4.53EE360 pKa = 4.19SGSS363 pKa = 3.6

Molecular weight: 40.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B8YB82|B8YB82_9GEMI Replication enhancer OS=Bhendi yellow vein Delhi virus [2004:New Delhi] OX=587620 GN=AC3 PE=3 SV=1
MM1 pKa = 6.62GTSHH5 pKa = 7.4IKK7 pKa = 9.23HH8 pKa = 5.19QRR10 pKa = 11.84ILGMILVFSCFLLIVNNIIVNPDD33 pKa = 3.2KK34 pKa = 11.33LLDD37 pKa = 3.47QSLFLTRR44 pKa = 11.84ILTTRR49 pKa = 11.84NGCMPFPQHH58 pKa = 6.5LVTIPMHH65 pKa = 5.98ILHH68 pKa = 6.66GRR70 pKa = 11.84RR71 pKa = 11.84TGFVVKK77 pKa = 10.41HH78 pKa = 5.68IKK80 pKa = 10.52YY81 pKa = 8.07LTKK84 pKa = 10.04ILGFIYY90 pKa = 10.28RR91 pKa = 11.84SSITNKK97 pKa = 9.54EE98 pKa = 3.56KK99 pKa = 9.65HH100 pKa = 5.68HH101 pKa = 7.13RR102 pKa = 11.84IRR104 pKa = 11.84MVLGLDD110 pKa = 3.63VLVHH114 pKa = 6.48PNLTT118 pKa = 3.57

Molecular weight: 13.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1234

100

363

176.3

20.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.943 ± 1.025

2.35 ± 0.38

4.457 ± 0.417

4.619 ± 0.862

4.052 ± 0.528

4.862 ± 0.432

3.728 ± 0.651

5.348 ± 0.671

5.754 ± 0.726

8.671 ± 0.996

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.431 ± 0.69

6.24 ± 0.446

5.835 ± 0.485

4.943 ± 0.799

6.402 ± 0.98

8.671 ± 1.479

5.997 ± 1.125

5.916 ± 1.112

1.297 ± 0.168

3.485 ± 0.531
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski