Tardibacter chloracetimidivorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Tardibacter

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3667 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3ZSV4|A0A1L3ZSV4_9SPHN Uncharacterized protein OS=Tardibacter chloracetimidivorans OX=1921510 GN=BSL82_04760 PE=4 SV=1
MM1 pKa = 7.88AEE3 pKa = 4.05PADD6 pKa = 3.72LQLAIEE12 pKa = 4.61AFNTAVEE19 pKa = 4.65AYY21 pKa = 10.22VADD24 pKa = 4.04ATPGLDD30 pKa = 3.85KK31 pKa = 11.35VSLTHH36 pKa = 7.5DD37 pKa = 3.27GVTVYY42 pKa = 10.54FNEE45 pKa = 4.24TGLASAVLSTGEE57 pKa = 3.96ALQDD61 pKa = 3.35AVNALGVAVAADD73 pKa = 3.72ADD75 pKa = 4.26GVTKK79 pKa = 10.49FVEE82 pKa = 3.84LDD84 pKa = 3.51GYY86 pKa = 10.42DD87 pKa = 3.34AQIANGVLYY96 pKa = 9.22QLRR99 pKa = 11.84HH100 pKa = 5.98DD101 pKa = 3.9

Molecular weight: 10.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L4A109|A0A1L4A109_9SPHN Uncharacterized protein OS=Tardibacter chloracetimidivorans OX=1921510 GN=BSL82_19175 PE=4 SV=1
MM1 pKa = 6.76FTVANSISLSAPLARR16 pKa = 11.84VWRR19 pKa = 11.84VLVDD23 pKa = 2.9VDD25 pKa = 5.38RR26 pKa = 11.84YY27 pKa = 10.49RR28 pKa = 11.84DD29 pKa = 3.24WHH31 pKa = 5.82PTVGLEE37 pKa = 5.24SDD39 pKa = 3.49PADD42 pKa = 4.01PKK44 pKa = 11.24KK45 pKa = 10.68LLCTYY50 pKa = 7.73WRR52 pKa = 11.84PGWTDD57 pKa = 3.04PVISADD63 pKa = 3.32GRR65 pKa = 11.84IVCLEE70 pKa = 4.24RR71 pKa = 11.84PCHH74 pKa = 4.88FAWRR78 pKa = 11.84VGIKK82 pKa = 10.42GLLQIEE88 pKa = 4.48EE89 pKa = 4.44GFHH92 pKa = 6.26LKK94 pKa = 10.3KK95 pKa = 10.78SPEE98 pKa = 4.12GTRR101 pKa = 11.84LTHH104 pKa = 7.11RR105 pKa = 11.84LCCSGIGSWPGIVTSPFLRR124 pKa = 11.84RR125 pKa = 11.84QLVRR129 pKa = 11.84TGDD132 pKa = 3.4SLEE135 pKa = 3.79RR136 pKa = 11.84HH137 pKa = 5.8LRR139 pKa = 11.84RR140 pKa = 11.84GTVISRR146 pKa = 11.84YY147 pKa = 7.21AQRR150 pKa = 11.84NARR153 pKa = 11.84PRR155 pKa = 3.36

Molecular weight: 17.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3667

0

3667

1070970

28

2117

292.1

31.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.76 ± 0.061

0.865 ± 0.013

5.974 ± 0.026

5.777 ± 0.039

3.472 ± 0.025

8.694 ± 0.041

2.084 ± 0.019

5.047 ± 0.027

3.051 ± 0.033

9.786 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.463 ± 0.022

2.577 ± 0.023

5.194 ± 0.03

3.141 ± 0.021

7.662 ± 0.043

5.48 ± 0.027

5.132 ± 0.029

7.162 ± 0.031

1.433 ± 0.016

2.247 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski