Paenibacillus lycopersici

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5671 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6C0FU95|A0A6C0FU95_9BACL TCR/Tet family MFS transporter OS=Paenibacillus lycopersici OX=2704462 GN=GXP70_10995 PE=4 SV=1
MM1 pKa = 7.33PAEE4 pKa = 3.99TAEE7 pKa = 4.07AVAWALQQSIVVDD20 pKa = 3.9GDD22 pKa = 3.67AYY24 pKa = 9.92PVKK27 pKa = 10.53KK28 pKa = 9.45DD29 pKa = 3.36TCQMLVDD36 pKa = 4.13KK37 pKa = 11.16VSEE40 pKa = 4.11YY41 pKa = 11.08FNANNIEE48 pKa = 4.06YY49 pKa = 10.45GSFSFADD56 pKa = 3.74LMAGGFLDD64 pKa = 3.77

Molecular weight: 6.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6C0FX16|A0A6C0FX16_9BACL ATP-binding cassette domain-containing protein OS=Paenibacillus lycopersici OX=2704462 GN=GXP70_17945 PE=4 SV=1
MM1 pKa = 7.9RR2 pKa = 11.84PTFKK6 pKa = 10.82PNVSKK11 pKa = 10.8RR12 pKa = 11.84KK13 pKa = 8.95KK14 pKa = 8.25VHH16 pKa = 5.48GFRR19 pKa = 11.84KK20 pKa = 10.03RR21 pKa = 11.84MASANGRR28 pKa = 11.84KK29 pKa = 9.2VLSARR34 pKa = 11.84RR35 pKa = 11.84KK36 pKa = 8.65RR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.98VLSAA44 pKa = 4.11

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5671

0

5671

1865584

25

2985

329.0

36.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.164 ± 0.048

0.794 ± 0.011

5.397 ± 0.027

6.305 ± 0.038

4.005 ± 0.024

8.048 ± 0.029

2.098 ± 0.016

6.006 ± 0.029

4.546 ± 0.028

9.916 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.754 ± 0.017

3.466 ± 0.024

4.296 ± 0.02

3.614 ± 0.021

5.853 ± 0.037

5.924 ± 0.029

5.226 ± 0.036

6.931 ± 0.029

1.321 ± 0.014

3.335 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski