Corynebacterium spheniscorum

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2153 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I2RJ62|A0A1I2RJ62_9CORY Uncharacterized protein (Fragment) OS=Corynebacterium spheniscorum OX=185761 GN=SAMN05660282_00824 PE=4 SV=1
MM1 pKa = 7.61SSLPNDD7 pKa = 3.33YY8 pKa = 9.92TYY10 pKa = 11.3SEE12 pKa = 3.98DD13 pKa = 4.35HH14 pKa = 6.12EE15 pKa = 5.05WINATAEE22 pKa = 3.97DD23 pKa = 3.86AAGKK27 pKa = 9.42IVRR30 pKa = 11.84VGITSVATEE39 pKa = 3.86RR40 pKa = 11.84LGEE43 pKa = 4.23VVFAEE48 pKa = 4.38LPEE51 pKa = 4.62VGDD54 pKa = 4.09SVTHH58 pKa = 6.58SEE60 pKa = 4.18TCGEE64 pKa = 4.22VEE66 pKa = 4.29STKK69 pKa = 10.7SVSDD73 pKa = 4.02LYY75 pKa = 11.42SPVSGTVTAVNDD87 pKa = 4.18AVHH90 pKa = 7.42DD91 pKa = 4.65DD92 pKa = 3.8YY93 pKa = 12.12SVINSDD99 pKa = 3.59PFGEE103 pKa = 4.41GWLFEE108 pKa = 4.45VEE110 pKa = 4.08VTEE113 pKa = 5.12AGEE116 pKa = 4.0LMTAEE121 pKa = 5.12EE122 pKa = 4.3YY123 pKa = 11.23AKK125 pKa = 11.18ANGVDD130 pKa = 3.32

Molecular weight: 13.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I2UKA4|A0A1I2UKA4_9CORY Ring-1 2-phenylacetyl-CoA epoxidase subunit PaaA OS=Corynebacterium spheniscorum OX=185761 GN=SAMN05660282_01913 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.88GFRR22 pKa = 11.84IRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AVVAARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.7GRR42 pKa = 11.84AKK44 pKa = 9.63LTAA47 pKa = 4.21

Molecular weight: 5.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2153

0

2153

709375

27

3039

329.5

35.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.434 ± 0.059

0.845 ± 0.018

5.685 ± 0.046

6.685 ± 0.059

3.23 ± 0.034

8.177 ± 0.053

2.355 ± 0.026

5.346 ± 0.043

3.469 ± 0.044

9.946 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.293 ± 0.024

2.786 ± 0.031

5.387 ± 0.046

3.325 ± 0.028

6.217 ± 0.055

5.736 ± 0.033

5.756 ± 0.042

7.744 ± 0.046

1.364 ± 0.023

2.221 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski