Tomato leaf curl Yemen betasatellite

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite

Average proteome isoelectric point is 5.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I3QBA1|I3QBA1_9VIRU Beta C1 OS=Tomato leaf curl Yemen betasatellite OX=1176156 PE=4 SV=1
MM1 pKa = 7.43TINYY5 pKa = 8.02RR6 pKa = 11.84NSKK9 pKa = 9.73GVEE12 pKa = 4.12FKK14 pKa = 10.84IEE16 pKa = 3.66VHH18 pKa = 6.87LITEE22 pKa = 4.63TVRR25 pKa = 11.84CIIRR29 pKa = 11.84VATTRR34 pKa = 11.84EE35 pKa = 3.94PNMMNRR41 pKa = 11.84RR42 pKa = 11.84FIIPYY47 pKa = 9.95SYY49 pKa = 11.1DD50 pKa = 3.35QIIAPFDD57 pKa = 3.97FNGTEE62 pKa = 4.11EE63 pKa = 4.37EE64 pKa = 4.48IKK66 pKa = 9.5TALINRR72 pKa = 11.84YY73 pKa = 9.32RR74 pKa = 11.84DD75 pKa = 3.19TGYY78 pKa = 10.76SAIRR82 pKa = 11.84EE83 pKa = 3.97EE84 pKa = 5.12DD85 pKa = 2.96IVEE88 pKa = 4.06IVDD91 pKa = 3.47MVIAEE96 pKa = 4.13NTGLHH101 pKa = 6.14GLQIIEE107 pKa = 4.55PYY109 pKa = 9.81QFRR112 pKa = 11.84QNFGVV117 pKa = 3.25

Molecular weight: 13.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I3QBA1|I3QBA1_9VIRU Beta C1 OS=Tomato leaf curl Yemen betasatellite OX=1176156 PE=4 SV=1
MM1 pKa = 7.43TINYY5 pKa = 8.02RR6 pKa = 11.84NSKK9 pKa = 9.73GVEE12 pKa = 4.12FKK14 pKa = 10.84IEE16 pKa = 3.66VHH18 pKa = 6.87LITEE22 pKa = 4.63TVRR25 pKa = 11.84CIIRR29 pKa = 11.84VATTRR34 pKa = 11.84EE35 pKa = 3.94PNMMNRR41 pKa = 11.84RR42 pKa = 11.84FIIPYY47 pKa = 9.95SYY49 pKa = 11.1DD50 pKa = 3.35QIIAPFDD57 pKa = 3.97FNGTEE62 pKa = 4.11EE63 pKa = 4.37EE64 pKa = 4.48IKK66 pKa = 9.5TALINRR72 pKa = 11.84YY73 pKa = 9.32RR74 pKa = 11.84DD75 pKa = 3.19TGYY78 pKa = 10.76SAIRR82 pKa = 11.84EE83 pKa = 3.97EE84 pKa = 5.12DD85 pKa = 2.96IVEE88 pKa = 4.06IVDD91 pKa = 3.47MVIAEE96 pKa = 4.13NTGLHH101 pKa = 6.14GLQIIEE107 pKa = 4.55PYY109 pKa = 9.81QFRR112 pKa = 11.84QNFGVV117 pKa = 3.25

Molecular weight: 13.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

117

117

117

117.0

13.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.274 ± 0.0

0.855 ± 0.0

4.274 ± 0.0

10.256 ± 0.0

5.128 ± 0.0

5.128 ± 0.0

1.709 ± 0.0

14.53 ± 0.0

2.564 ± 0.0

3.419 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.419 ± 0.0

6.838 ± 0.0

3.419 ± 0.0

3.419 ± 0.0

8.547 ± 0.0

2.564 ± 0.0

7.692 ± 0.0

6.838 ± 0.0

0.0 ± 0.0

5.128 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski