Kangiella geojedonensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Kangiellaceae; Kangiella

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2207 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F6RCU7|A0A0F6RCU7_9GAMM M6 family metalloprotease domain protein OS=Kangiella geojedonensis OX=914150 GN=TQ33_1379 PE=4 SV=1
MM1 pKa = 6.95VVSKK5 pKa = 10.74AVYY8 pKa = 9.84KK9 pKa = 10.8GFILLMLLLTCVRR22 pKa = 11.84VEE24 pKa = 4.03SATVEE29 pKa = 4.43FQVNWPEE36 pKa = 3.54WSQEE40 pKa = 3.74NRR42 pKa = 11.84IEE44 pKa = 4.38FYY46 pKa = 9.99NTAVDD51 pKa = 3.62VADD54 pKa = 4.82RR55 pKa = 11.84DD56 pKa = 3.81GDD58 pKa = 4.05GNTTEE63 pKa = 5.09IINSNLVTTRR73 pKa = 11.84YY74 pKa = 10.04GGEE77 pKa = 3.84NAICVPGFCTLPAVANTSFSQNYY100 pKa = 6.95TFNNVPSGNYY110 pKa = 9.48RR111 pKa = 11.84IVMYY115 pKa = 10.73DD116 pKa = 3.46DD117 pKa = 6.43FGDD120 pKa = 3.49GWNGGGTLTVLVNGTNIGTVTTTTSVTSTNVFTISDD156 pKa = 4.17TPTGTTAQTCSDD168 pKa = 4.08ANLTNAWSNLGASPQATAGAIPVSISTTDD197 pKa = 3.12TGPAGWVFSSDD208 pKa = 2.98TMNTINAWSSAAVQGRR224 pKa = 11.84TSLGVLFEE232 pKa = 4.38WDD234 pKa = 3.81PTPGANGFEE243 pKa = 4.27PVYY246 pKa = 10.52QATNSDD252 pKa = 3.56GVVNDD257 pKa = 4.01NDD259 pKa = 4.19PGGEE263 pKa = 3.97GTMDD267 pKa = 2.93ISFGGRR273 pKa = 11.84TVNNAIVHH281 pKa = 6.24IDD283 pKa = 3.26RR284 pKa = 11.84VGGIGAGVTNSSRR297 pKa = 11.84WGINTAGVTLGRR309 pKa = 11.84LAGVGHH315 pKa = 6.89FATYY319 pKa = 9.96TNNTFQRR326 pKa = 11.84DD327 pKa = 3.93MLVVSANTEE336 pKa = 4.06SSTNTATGTAAGSVVYY352 pKa = 10.29QGEE355 pKa = 4.42YY356 pKa = 9.17STLSLGLDD364 pKa = 4.24GIGLEE369 pKa = 4.48GAGGDD374 pKa = 3.67GMEE377 pKa = 4.58MVVCVPQADD386 pKa = 3.84LSLTKK391 pKa = 10.26TVDD394 pKa = 3.18NSNPNVGEE402 pKa = 4.0NVTYY406 pKa = 10.24TLTVTNNGPDD416 pKa = 3.48ATNDD420 pKa = 3.02IQVRR424 pKa = 11.84DD425 pKa = 4.18LLPAEE430 pKa = 4.7LDD432 pKa = 3.65FVSATEE438 pKa = 4.24SQGSFASGSGIWTVGTLANGASATLDD464 pKa = 3.02IVVSPNTAGVITNEE478 pKa = 3.95AEE480 pKa = 4.09IINADD485 pKa = 4.41RR486 pKa = 11.84IDD488 pKa = 4.16PDD490 pKa = 3.68SEE492 pKa = 4.12FRR494 pKa = 11.84SGLATDD500 pKa = 4.91DD501 pKa = 4.38LADD504 pKa = 5.51GIADD508 pKa = 4.05DD509 pKa = 5.78DD510 pKa = 4.3EE511 pKa = 6.79ASVDD515 pKa = 3.43INAGVVDD522 pKa = 3.9VSVTKK527 pKa = 10.7SSSNDD532 pKa = 3.73FIPGGTDD539 pKa = 2.74TYY541 pKa = 10.94TIIVSNAGPSDD552 pKa = 4.42AIGLLVSDD560 pKa = 4.86NLPSGVTLSGSWSCTPSAAGSSCNSASGGAAGGTSVSVTVNVAAGEE606 pKa = 4.21QVTITVPVEE615 pKa = 3.82YY616 pKa = 10.52SADD619 pKa = 3.59PTDD622 pKa = 3.67YY623 pKa = 11.62

Molecular weight: 63.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F6RAX0|A0A0F6RAX0_9GAMM 4-hydroxybenzoate octaprenyltransferase OS=Kangiella geojedonensis OX=914150 GN=ubiA PE=3 SV=1
MM1 pKa = 7.25ATINQLVRR9 pKa = 11.84KK10 pKa = 8.95PRR12 pKa = 11.84VKK14 pKa = 9.97QVKK17 pKa = 8.11KK18 pKa = 8.73TNVPALEE25 pKa = 4.4ACPQKK30 pKa = 10.67RR31 pKa = 11.84GVCTRR36 pKa = 11.84VYY38 pKa = 7.93TTTPKK43 pKa = 10.54KK44 pKa = 10.26PNSALRR50 pKa = 11.84KK51 pKa = 7.21VARR54 pKa = 11.84VRR56 pKa = 11.84LTNGYY61 pKa = 8.94EE62 pKa = 3.76VSSYY66 pKa = 10.86IGGEE70 pKa = 3.91GHH72 pKa = 6.6NLQEE76 pKa = 4.28HH77 pKa = 5.6SVVLIRR83 pKa = 11.84GGRR86 pKa = 11.84VKK88 pKa = 10.7DD89 pKa = 3.73LPGVRR94 pKa = 11.84YY95 pKa = 9.07HH96 pKa = 6.62CVRR99 pKa = 11.84GTLDD103 pKa = 3.37LAGVKK108 pKa = 9.49DD109 pKa = 4.14RR110 pKa = 11.84KK111 pKa = 9.86QGRR114 pKa = 11.84SKK116 pKa = 11.18YY117 pKa = 9.02GAKK120 pKa = 9.93RR121 pKa = 11.84PKK123 pKa = 10.33GG124 pKa = 3.5

Molecular weight: 13.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2207

0

2207

737553

50

8155

334.2

37.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.116 ± 0.065

0.869 ± 0.021

6.073 ± 0.087

6.873 ± 0.061

4.066 ± 0.035

6.979 ± 0.057

2.198 ± 0.031

6.317 ± 0.041

5.893 ± 0.082

9.917 ± 0.083

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.448 ± 0.035

4.283 ± 0.042

3.867 ± 0.026

4.361 ± 0.049

4.353 ± 0.057

6.698 ± 0.054

5.341 ± 0.171

6.927 ± 0.047

1.211 ± 0.023

3.212 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski