Duck faeces associated circular DNA virus 2

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 7.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A160HX33|A0A160HX33_9VIRU Replication associated protein OS=Duck faeces associated circular DNA virus 2 OX=1843769 PE=3 SV=1
MM1 pKa = 6.56TTPIAEE7 pKa = 4.51DD8 pKa = 3.42NDD10 pKa = 3.83FKK12 pKa = 11.37FQGIRR17 pKa = 11.84ALLTYY22 pKa = 7.05PQCNEE27 pKa = 3.49GSIEE31 pKa = 3.94EE32 pKa = 4.57LLTFFKK38 pKa = 10.62TIFGNKK44 pKa = 7.91IEE46 pKa = 4.56YY47 pKa = 10.07IVVCKK52 pKa = 10.21EE53 pKa = 3.69NHH55 pKa = 6.35HH56 pKa = 5.74EE57 pKa = 4.13TDD59 pKa = 3.44GEE61 pKa = 4.45HH62 pKa = 4.54YY63 pKa = 10.26HH64 pKa = 7.94AYY66 pKa = 9.82IKK68 pKa = 10.77FNTRR72 pKa = 11.84TRR74 pKa = 11.84VYY76 pKa = 11.07ANNLVYY82 pKa = 10.48RR83 pKa = 11.84GVRR86 pKa = 11.84PNIEE90 pKa = 4.02KK91 pKa = 8.83VTRR94 pKa = 11.84TAYY97 pKa = 10.5AAVNYY102 pKa = 9.3VKK104 pKa = 10.66KK105 pKa = 10.68DD106 pKa = 3.51GNFKK110 pKa = 11.11EE111 pKa = 5.13EE112 pKa = 4.52GTCTDD117 pKa = 2.95IKK119 pKa = 11.08KK120 pKa = 8.77LTTQEE125 pKa = 3.78KK126 pKa = 10.0YY127 pKa = 10.97KK128 pKa = 10.67LIKK131 pKa = 8.46EE132 pKa = 4.12KK133 pKa = 10.59KK134 pKa = 7.93YY135 pKa = 10.73IEE137 pKa = 4.24IFEE140 pKa = 4.41MATLSLPEE148 pKa = 4.11LCKK151 pKa = 10.6VKK153 pKa = 10.45QIQRR157 pKa = 11.84EE158 pKa = 4.21LIINDD163 pKa = 3.41WPLDD167 pKa = 3.45GSKK170 pKa = 10.34NRR172 pKa = 11.84KK173 pKa = 9.28VYY175 pKa = 9.31WFYY178 pKa = 11.73GKK180 pKa = 8.6TGTGKK185 pKa = 8.1TRR187 pKa = 11.84EE188 pKa = 4.23ATKK191 pKa = 10.61MMIEE195 pKa = 4.62LYY197 pKa = 10.25GEE199 pKa = 3.88NWISLTGDD207 pKa = 3.03LRR209 pKa = 11.84TFFDD213 pKa = 4.61PYY215 pKa = 10.64NGEE218 pKa = 3.97KK219 pKa = 10.68GVIFDD224 pKa = 4.59DD225 pKa = 3.72VRR227 pKa = 11.84KK228 pKa = 10.38GSIIWNTLLTITDD241 pKa = 4.2RR242 pKa = 11.84YY243 pKa = 7.67RR244 pKa = 11.84TSVNVKK250 pKa = 9.63GSRR253 pKa = 11.84IPWLAEE259 pKa = 3.81TIIFTSPQHH268 pKa = 4.68FTEE271 pKa = 4.38VFTTEE276 pKa = 3.84KK277 pKa = 10.66DD278 pKa = 3.35GEE280 pKa = 4.16RR281 pKa = 11.84AQWDD285 pKa = 3.68GLEE288 pKa = 3.96QFEE291 pKa = 5.08RR292 pKa = 11.84RR293 pKa = 11.84ISEE296 pKa = 3.63IKK298 pKa = 10.33EE299 pKa = 3.88FNN301 pKa = 3.27

Molecular weight: 35.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A160HX33|A0A160HX33_9VIRU Replication associated protein OS=Duck faeces associated circular DNA virus 2 OX=1843769 PE=3 SV=1
MM1 pKa = 7.28PRR3 pKa = 11.84YY4 pKa = 9.47YY5 pKa = 10.39KK6 pKa = 10.29YY7 pKa = 10.12KK8 pKa = 8.93RR9 pKa = 11.84YY10 pKa = 8.87YY11 pKa = 10.19RR12 pKa = 11.84RR13 pKa = 11.84MYY15 pKa = 9.38PKK17 pKa = 10.21KK18 pKa = 9.42RR19 pKa = 11.84WASNIFTEE27 pKa = 4.22NNIVTVLASQKK38 pKa = 10.7DD39 pKa = 3.79AFASTTICANSPQTDD54 pKa = 3.48VPTPVIVKK62 pKa = 9.31FGRR65 pKa = 11.84CKK67 pKa = 10.4VKK69 pKa = 10.74GDD71 pKa = 3.45VRR73 pKa = 11.84TDD75 pKa = 3.33LDD77 pKa = 3.5NGNNFVSATMYY88 pKa = 10.31LAYY91 pKa = 10.52VPEE94 pKa = 5.45GYY96 pKa = 9.73PIADD100 pKa = 3.91LPKK103 pKa = 10.11LHH105 pKa = 7.36PEE107 pKa = 4.23YY108 pKa = 10.47IIGWTQISLDD118 pKa = 3.74SGNTFSFSSPLKK130 pKa = 10.41RR131 pKa = 11.84NLNSGDD137 pKa = 3.7KK138 pKa = 10.69IMMLFYY144 pKa = 11.01VSATNTAQYY153 pKa = 10.56VRR155 pKa = 11.84AFNFYY160 pKa = 9.53YY161 pKa = 9.8TVQYY165 pKa = 7.15WTTSAA170 pKa = 3.94

Molecular weight: 19.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

471

170

301

235.5

27.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.883 ± 1.203

1.274 ± 0.054

4.671 ± 0.019

6.794 ± 2.78

5.52 ± 0.125

5.52 ± 0.775

1.274 ± 0.379

7.431 ± 1.181

8.28 ± 1.0

5.945 ± 0.36

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.911 ± 0.57

6.157 ± 0.499

3.822 ± 1.139

2.76 ± 0.1

5.52 ± 0.125

4.671 ± 1.645

9.554 ± 0.404

5.732 ± 0.733

1.911 ± 0.081

6.369 ± 1.357
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski