Pine marten torque teno virus 1

Taxonomy: Viruses; Anelloviridae; Thetatorquevirus; Torque teno mustilid virus 1

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G9ITT1|G9ITT1_9VIRU Capsid protein OS=Pine marten torque teno virus 1 OX=1128423 PE=3 SV=1
MM1 pKa = 7.73LDD3 pKa = 3.74KK4 pKa = 10.43WLQSCADD11 pKa = 3.85THH13 pKa = 6.87SLWCKK18 pKa = 8.29CPEE21 pKa = 4.08WRR23 pKa = 11.84SHH25 pKa = 4.28VPGWRR30 pKa = 11.84GDD32 pKa = 3.67TAGDD36 pKa = 3.68GAAEE40 pKa = 4.24LPEE43 pKa = 4.37DD44 pKa = 3.72VQVAFDD50 pKa = 3.46IAFEE54 pKa = 5.17DD55 pKa = 5.22GADD58 pKa = 3.49SDD60 pKa = 3.82QPEE63 pKa = 3.94RR64 pKa = 4.02

Molecular weight: 7.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G9ITT1|G9ITT1_9VIRU Capsid protein OS=Pine marten torque teno virus 1 OX=1128423 PE=3 SV=1
MM1 pKa = 7.37AWRR4 pKa = 11.84YY5 pKa = 6.49RR6 pKa = 11.84WRR8 pKa = 11.84WRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84APRR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84AGRR20 pKa = 11.84FRR22 pKa = 11.84YY23 pKa = 9.51RR24 pKa = 11.84FRR26 pKa = 11.84RR27 pKa = 11.84WRR29 pKa = 11.84RR30 pKa = 11.84LRR32 pKa = 11.84PARR35 pKa = 11.84KK36 pKa = 7.59VRR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84YY43 pKa = 9.22RR44 pKa = 11.84KK45 pKa = 8.93RR46 pKa = 11.84HH47 pKa = 4.97FKK49 pKa = 10.42KK50 pKa = 10.38KK51 pKa = 10.19AIKK54 pKa = 8.99QWQPSHH60 pKa = 5.66VARR63 pKa = 11.84CIIRR67 pKa = 11.84GWHH70 pKa = 5.42IGFWGNKK77 pKa = 9.04ANLSYY82 pKa = 10.61PFQEE86 pKa = 3.87WTRR89 pKa = 11.84PTKK92 pKa = 10.44EE93 pKa = 3.81GEE95 pKa = 3.91AGFFTIRR102 pKa = 11.84EE103 pKa = 4.37GGASLWHH110 pKa = 6.38FNLSHH115 pKa = 7.66FYY117 pKa = 11.07RR118 pKa = 11.84EE119 pKa = 4.04FTFGRR124 pKa = 11.84NTWSRR129 pKa = 11.84SNEE132 pKa = 3.85GFDD135 pKa = 3.16LATYY139 pKa = 10.22HH140 pKa = 5.1GTKK143 pKa = 10.39LIFYY147 pKa = 6.96PHH149 pKa = 7.52PLHH152 pKa = 7.27NYY154 pKa = 8.03IVWWWRR160 pKa = 11.84DD161 pKa = 3.45FGDD164 pKa = 3.81VSAAQFKK171 pKa = 10.34HH172 pKa = 5.0SHH174 pKa = 5.81PAKK177 pKa = 10.45ALLEE181 pKa = 4.33RR182 pKa = 11.84NHH184 pKa = 6.06FVIKK188 pKa = 10.34SIPQGGRR195 pKa = 11.84KK196 pKa = 7.8KK197 pKa = 7.35TTIFIPPPTTIQTGWSVMKK216 pKa = 10.38KK217 pKa = 6.96WANVNLFRR225 pKa = 11.84LGMTMINTGNPLLHH239 pKa = 7.19KK240 pKa = 10.53GRR242 pKa = 11.84LLAKK246 pKa = 10.27VPIGTYY252 pKa = 9.08WSTGNYY258 pKa = 9.76RR259 pKa = 11.84YY260 pKa = 10.14FEE262 pKa = 4.61DD263 pKa = 3.89RR264 pKa = 11.84LPVEE268 pKa = 4.48TLPEE272 pKa = 4.2ASTNIAYY279 pKa = 9.47YY280 pKa = 9.74SWWWDD285 pKa = 3.23DD286 pKa = 3.61SQDD289 pKa = 3.36NKK291 pKa = 10.53IAIRR295 pKa = 11.84DD296 pKa = 3.88NEE298 pKa = 4.0NSNDD302 pKa = 3.53GEE304 pKa = 4.82TIFHH308 pKa = 6.66LKK310 pKa = 8.86IPYY313 pKa = 8.56WLEE316 pKa = 3.46FFGAGDD322 pKa = 3.51QYY324 pKa = 11.31IEE326 pKa = 4.11QTKK329 pKa = 10.02KK330 pKa = 10.84VYY332 pKa = 9.49IWWYY336 pKa = 10.36RR337 pKa = 11.84EE338 pKa = 3.61DD339 pKa = 4.32ASIIDD344 pKa = 3.71YY345 pKa = 10.84HH346 pKa = 8.1SITSEE351 pKa = 4.87HH352 pKa = 6.13RR353 pKa = 11.84KK354 pKa = 8.63QWIKK358 pKa = 10.88LGNSSQGSISTALLAWSNIGRR379 pKa = 11.84HH380 pKa = 5.66GPFMMAEE387 pKa = 4.06EE388 pKa = 5.42DD389 pKa = 3.38ISNNSYY395 pKa = 11.57SFFFKK400 pKa = 10.85YY401 pKa = 9.91KK402 pKa = 10.58SYY404 pKa = 9.02WRR406 pKa = 11.84WGGVHH411 pKa = 6.18PTPATNNDD419 pKa = 3.71PVTVSPNSDD428 pKa = 3.44DD429 pKa = 3.66FAEE432 pKa = 4.33VQVRR436 pKa = 11.84NPLRR440 pKa = 11.84VGRR443 pKa = 11.84AALHH447 pKa = 6.29PWDD450 pKa = 5.3LDD452 pKa = 3.38PDD454 pKa = 4.26GFITTAKK461 pKa = 9.63FRR463 pKa = 11.84DD464 pKa = 3.66MLGFSPSAITGLPPPIPQRR483 pKa = 11.84RR484 pKa = 11.84AKK486 pKa = 10.4RR487 pKa = 11.84SLSPSSGEE495 pKa = 4.1SEE497 pKa = 4.24EE498 pKa = 4.36EE499 pKa = 4.36GPSVRR504 pKa = 11.84RR505 pKa = 11.84RR506 pKa = 11.84RR507 pKa = 11.84SGDD510 pKa = 3.22GEE512 pKa = 4.27LEE514 pKa = 3.94QNSFYY519 pKa = 10.99FEE521 pKa = 4.62EE522 pKa = 4.85DD523 pKa = 3.28TLPPYY528 pKa = 8.99PTFPPGEE535 pKa = 4.04TAEE538 pKa = 4.15EE539 pKa = 4.43KK540 pKa = 10.38IRR542 pKa = 11.84ALVEE546 pKa = 3.42QLRR549 pKa = 11.84RR550 pKa = 11.84DD551 pKa = 3.26RR552 pKa = 11.84DD553 pKa = 3.24KK554 pKa = 11.11RR555 pKa = 11.84RR556 pKa = 11.84KK557 pKa = 8.1LRR559 pKa = 11.84KK560 pKa = 9.4RR561 pKa = 11.84IRR563 pKa = 11.84SFLRR567 pKa = 11.84DD568 pKa = 3.11

Molecular weight: 67.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

814

64

568

271.3

31.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.125 ± 1.574

0.86 ± 1.069

5.774 ± 2.257

6.511 ± 1.204

4.791 ± 1.364

7.371 ± 0.792

2.826 ± 0.447

4.791 ± 1.243

4.914 ± 0.841

6.265 ± 0.339

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.351 ± 0.136

3.317 ± 1.484

7.002 ± 0.681

3.808 ± 1.353

10.811 ± 1.533

7.002 ± 0.187

4.914 ± 0.67

3.194 ± 0.382

4.423 ± 0.718

2.948 ± 1.3
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski