Yersinia phage YpP-Y

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teseptimavirus; Yersinia virus YpPY

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 46 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I6QAD5|I6QAD5_9CAUD Protein inside capsid D OS=Yersinia phage YpP-Y OX=1176766 PE=3 SV=1
MM1 pKa = 7.89RR2 pKa = 11.84SYY4 pKa = 11.98DD5 pKa = 3.77MNVEE9 pKa = 4.15TAAEE13 pKa = 4.19LSAVNDD19 pKa = 3.37ILASIGEE26 pKa = 4.48PPVSTLGGDD35 pKa = 3.77SNADD39 pKa = 3.09VANARR44 pKa = 11.84RR45 pKa = 11.84ILNKK49 pKa = 9.68INRR52 pKa = 11.84QIQSRR57 pKa = 11.84GWTFNIEE64 pKa = 3.91EE65 pKa = 5.53GITLLPDD72 pKa = 3.63VYY74 pKa = 11.35SNLIVYY80 pKa = 10.33SDD82 pKa = 4.91DD83 pKa = 3.71YY84 pKa = 11.14LSLMATSGQSIYY96 pKa = 10.6VNRR99 pKa = 11.84GGYY102 pKa = 9.88VYY104 pKa = 10.89DD105 pKa = 3.76RR106 pKa = 11.84TSQSDD111 pKa = 3.41RR112 pKa = 11.84FDD114 pKa = 3.28SGITVNIIRR123 pKa = 11.84LRR125 pKa = 11.84DD126 pKa = 3.55YY127 pKa = 11.62DD128 pKa = 4.05EE129 pKa = 4.49MPEE132 pKa = 4.08CFRR135 pKa = 11.84YY136 pKa = 9.62WIVTKK141 pKa = 10.73ASRR144 pKa = 11.84QFNNRR149 pKa = 11.84FFGAPEE155 pKa = 3.93VEE157 pKa = 4.4GVLQEE162 pKa = 4.57EE163 pKa = 4.18EE164 pKa = 4.15DD165 pKa = 3.69EE166 pKa = 4.24ARR168 pKa = 11.84RR169 pKa = 11.84LCMEE173 pKa = 4.07YY174 pKa = 10.13EE175 pKa = 3.93VDD177 pKa = 3.46YY178 pKa = 11.41GGYY181 pKa = 11.22NMLDD185 pKa = 2.99GDD187 pKa = 4.62AFTSGLLTRR196 pKa = 5.06

Molecular weight: 22.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I6Q986|I6Q986_9CAUD DNA-directed DNA polymerase OS=Yersinia phage YpP-Y OX=1176766 PE=3 SV=1
MM1 pKa = 7.62RR2 pKa = 11.84KK3 pKa = 9.46SYY5 pKa = 10.38KK6 pKa = 9.86QFYY9 pKa = 8.52KK10 pKa = 10.52APRR13 pKa = 11.84RR14 pKa = 11.84HH15 pKa = 4.88IQVWEE20 pKa = 4.05AANGPIPKK28 pKa = 9.69GYY30 pKa = 10.59YY31 pKa = 8.84IDD33 pKa = 5.86HH34 pKa = 7.35IDD36 pKa = 4.32GNPLNDD42 pKa = 3.88ALDD45 pKa = 4.04NLRR48 pKa = 11.84LALPKK53 pKa = 10.31EE54 pKa = 4.42NSWNMKK60 pKa = 7.49TPKK63 pKa = 10.51SNTSGLKK70 pKa = 9.35GLSWSKK76 pKa = 10.23EE77 pKa = 3.55RR78 pKa = 11.84EE79 pKa = 3.78MWRR82 pKa = 11.84GTVTAEE88 pKa = 4.07GKK90 pKa = 8.14QHH92 pKa = 5.84NFRR95 pKa = 11.84SRR97 pKa = 11.84DD98 pKa = 3.59LLEE101 pKa = 4.06VVAWIYY107 pKa = 8.09RR108 pKa = 11.84TRR110 pKa = 11.84RR111 pKa = 11.84EE112 pKa = 3.8LHH114 pKa = 5.41GQFARR119 pKa = 11.84FRR121 pKa = 3.88

Molecular weight: 14.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

46

0

46

10922

37

1318

237.4

26.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.845 ± 0.549

0.998 ± 0.206

6.574 ± 0.261

7.196 ± 0.375

3.653 ± 0.197

7.398 ± 0.344

1.932 ± 0.205

5.301 ± 0.2

6.794 ± 0.464

7.938 ± 0.3

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.957 ± 0.249

4.587 ± 0.385

3.415 ± 0.236

3.818 ± 0.306

5.869 ± 0.248

6.107 ± 0.352

5.503 ± 0.264

6.235 ± 0.234

1.593 ± 0.196

3.287 ± 0.202
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski