Strawberry latent ringspot virus satellite RNA

Taxonomy: Viruses; Satellites; RNA satellites; Single stranded RNA satellites; Large single stranded RNA satellites

Average proteome isoelectric point is 9.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q07996|Q07996_9VIRU 36 kDa protein OS=Strawberry latent ringspot virus satellite RNA OX=195062 PE=4 SV=1
MM1 pKa = 6.67VQNSVLKK8 pKa = 10.77GGGGVLPKK16 pKa = 9.96RR17 pKa = 11.84VRR19 pKa = 11.84VISKK23 pKa = 8.91RR24 pKa = 11.84RR25 pKa = 11.84ARR27 pKa = 11.84IFTVGRR33 pKa = 11.84HH34 pKa = 5.83DD35 pKa = 4.17LHH37 pKa = 6.83VLPSGKK43 pKa = 9.8RR44 pKa = 11.84AWVPVRR50 pKa = 11.84APIAAGGSFRR60 pKa = 11.84RR61 pKa = 11.84EE62 pKa = 3.57RR63 pKa = 11.84PPVVSHH69 pKa = 6.34KK70 pKa = 7.77TQQVRR75 pKa = 11.84PIRR78 pKa = 11.84TPTAVKK84 pKa = 9.38TSNRR88 pKa = 11.84FASLSVKK95 pKa = 10.31EE96 pKa = 4.24EE97 pKa = 3.9APEE100 pKa = 3.78AVAPFNPKK108 pKa = 9.64KK109 pKa = 10.38KK110 pKa = 10.27SYY112 pKa = 11.24ADD114 pKa = 3.58ALRR117 pKa = 11.84SSAFVKK123 pKa = 10.08PSARR127 pKa = 11.84KK128 pKa = 9.11GVVTLVEE135 pKa = 4.26TEE137 pKa = 3.55KK138 pKa = 11.28DD139 pKa = 3.15FALFCDD145 pKa = 4.5EE146 pKa = 4.17FTQNQVVPCPGQTLSEE162 pKa = 4.31AEE164 pKa = 3.94SLQRR168 pKa = 11.84EE169 pKa = 3.89FHH171 pKa = 5.99KK172 pKa = 10.8RR173 pKa = 11.84AFAFSGKK180 pKa = 9.28RR181 pKa = 11.84LSVSGLPEE189 pKa = 4.14GPIPSLLLRR198 pKa = 11.84QSACNCPKK206 pKa = 10.14GCHH209 pKa = 6.03VDD211 pKa = 3.63PVSWEE216 pKa = 3.78GMSFGQCSRR225 pKa = 11.84ALTLYY230 pKa = 10.34RR231 pKa = 11.84QLCGCFGMKK240 pKa = 9.15MFSSSLYY247 pKa = 9.3GMAVRR252 pKa = 11.84RR253 pKa = 11.84FSALGKK259 pKa = 9.83ISLWQSRR266 pKa = 11.84KK267 pKa = 9.25ILLVTGRR274 pKa = 11.84LARR277 pKa = 11.84IWRR280 pKa = 11.84PSTSLYY286 pKa = 10.68SYY288 pKa = 8.66TSSSRR293 pKa = 11.84FVPMIRR299 pKa = 11.84SGTWAFFKK307 pKa = 10.69DD308 pKa = 3.48SLIIGSTHH316 pKa = 6.17ACVVHH321 pKa = 6.44ICSEE325 pKa = 4.3TGIEE329 pKa = 4.03PAA331 pKa = 4.45

Molecular weight: 36.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q07996|Q07996_9VIRU 36 kDa protein OS=Strawberry latent ringspot virus satellite RNA OX=195062 PE=4 SV=1
MM1 pKa = 6.67VQNSVLKK8 pKa = 10.77GGGGVLPKK16 pKa = 9.96RR17 pKa = 11.84VRR19 pKa = 11.84VISKK23 pKa = 8.91RR24 pKa = 11.84RR25 pKa = 11.84ARR27 pKa = 11.84IFTVGRR33 pKa = 11.84HH34 pKa = 5.83DD35 pKa = 4.17LHH37 pKa = 6.83VLPSGKK43 pKa = 9.8RR44 pKa = 11.84AWVPVRR50 pKa = 11.84APIAAGGSFRR60 pKa = 11.84RR61 pKa = 11.84EE62 pKa = 3.57RR63 pKa = 11.84PPVVSHH69 pKa = 6.34KK70 pKa = 7.77TQQVRR75 pKa = 11.84PIRR78 pKa = 11.84TPTAVKK84 pKa = 9.38TSNRR88 pKa = 11.84FASLSVKK95 pKa = 10.31EE96 pKa = 4.24EE97 pKa = 3.9APEE100 pKa = 3.78AVAPFNPKK108 pKa = 9.64KK109 pKa = 10.38KK110 pKa = 10.27SYY112 pKa = 11.24ADD114 pKa = 3.58ALRR117 pKa = 11.84SSAFVKK123 pKa = 10.08PSARR127 pKa = 11.84KK128 pKa = 9.11GVVTLVEE135 pKa = 4.26TEE137 pKa = 3.55KK138 pKa = 11.28DD139 pKa = 3.15FALFCDD145 pKa = 4.5EE146 pKa = 4.17FTQNQVVPCPGQTLSEE162 pKa = 4.31AEE164 pKa = 3.94SLQRR168 pKa = 11.84EE169 pKa = 3.89FHH171 pKa = 5.99KK172 pKa = 10.8RR173 pKa = 11.84AFAFSGKK180 pKa = 9.28RR181 pKa = 11.84LSVSGLPEE189 pKa = 4.14GPIPSLLLRR198 pKa = 11.84QSACNCPKK206 pKa = 10.14GCHH209 pKa = 6.03VDD211 pKa = 3.63PVSWEE216 pKa = 3.78GMSFGQCSRR225 pKa = 11.84ALTLYY230 pKa = 10.34RR231 pKa = 11.84QLCGCFGMKK240 pKa = 9.15MFSSSLYY247 pKa = 9.3GMAVRR252 pKa = 11.84RR253 pKa = 11.84FSALGKK259 pKa = 9.83ISLWQSRR266 pKa = 11.84KK267 pKa = 9.25ILLVTGRR274 pKa = 11.84LARR277 pKa = 11.84IWRR280 pKa = 11.84PSTSLYY286 pKa = 10.68SYY288 pKa = 8.66TSSSRR293 pKa = 11.84FVPMIRR299 pKa = 11.84SGTWAFFKK307 pKa = 10.69DD308 pKa = 3.48SLIIGSTHH316 pKa = 6.17ACVVHH321 pKa = 6.44ICSEE325 pKa = 4.3TGIEE329 pKa = 4.03PAA331 pKa = 4.45

Molecular weight: 36.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

331

331

331

331.0

36.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.855 ± 0.0

3.021 ± 0.0

1.813 ± 0.0

4.23 ± 0.0

5.438 ± 0.0

7.251 ± 0.0

2.115 ± 0.0

3.927 ± 0.0

6.042 ± 0.0

7.855 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.813 ± 0.0

1.511 ± 0.0

6.647 ± 0.0

3.323 ± 0.0

9.063 ± 0.0

11.48 ± 0.0

4.834 ± 0.0

8.761 ± 0.0

1.511 ± 0.0

1.511 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski