Pseudomonas phage Zuri

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Schitoviridae; Zurivirus; Pseudomonas virus Zuri

Average proteome isoelectric point is 6.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 99 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C1K5H7|A0A5C1K5H7_9CAUD Uncharacterized protein OS=Pseudomonas phage Zuri OX=2604899 GN=Zuri_35 PE=4 SV=1
MM1 pKa = 7.42NNYY4 pKa = 9.17PDD6 pKa = 4.57EE7 pKa = 4.97FEE9 pKa = 5.35LPADD13 pKa = 3.91HH14 pKa = 7.94DD15 pKa = 3.46IHH17 pKa = 6.27EE18 pKa = 4.76LLRR21 pKa = 11.84ITEE24 pKa = 4.45TICDD28 pKa = 3.67EE29 pKa = 4.26MEE31 pKa = 4.15TPNGSGSSS39 pKa = 3.46

Molecular weight: 4.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C1K6U0|A0A5C1K6U0_9CAUD Shock protein A OS=Pseudomonas phage Zuri OX=2604899 GN=Zuri_3 PE=4 SV=1
MM1 pKa = 7.83AIICRR6 pKa = 11.84TTKK9 pKa = 10.46QDD11 pKa = 3.75INTCKK16 pKa = 10.29CSRR19 pKa = 11.84CHH21 pKa = 5.39PHH23 pKa = 6.19QEE25 pKa = 3.43ARR27 pKa = 11.84YY28 pKa = 8.6GHH30 pKa = 5.91VQRR33 pKa = 11.84QVASRR38 pKa = 11.84QAGSKK43 pKa = 10.24KK44 pKa = 10.19LVLVRR49 pKa = 11.84VV50 pKa = 3.87

Molecular weight: 5.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

99

0

99

23976

29

3474

242.2

26.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.418 ± 0.479

0.859 ± 0.133

5.935 ± 0.166

6.582 ± 0.281

3.545 ± 0.179

6.648 ± 0.23

2.01 ± 0.203

5.335 ± 0.264

5.973 ± 0.299

8.821 ± 0.212

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.853 ± 0.144

4.872 ± 0.182

4.379 ± 0.145

5.222 ± 0.304

4.817 ± 0.206

5.568 ± 0.238

5.889 ± 0.28

6.84 ± 0.192

1.293 ± 0.131

3.116 ± 0.169
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski