Thermoplasmatales archaeon (strain BRNA1)

Taxonomy: cellular organisms; Archaea; Candidatus Thermoplasmatota; Thermoplasmata; Thermoplasmatales; unclassified Thermoplasmatales

Average proteome isoelectric point is 5.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1528 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M4YM78|M4YM78_THEXX Delta-aminolevulinic acid dehydratase OS=Thermoplasmatales archaeon (strain BRNA1) OX=1054217 GN=TALC_01208 PE=3 SV=1
MM1 pKa = 7.73EE2 pKa = 5.48LRR4 pKa = 11.84NGEE7 pKa = 3.68IGLIVLLAGIPVIIAGFLCFTEE29 pKa = 4.4IVGLGLAALFYY40 pKa = 10.91VGVAMIIIGAALCYY54 pKa = 9.83IDD56 pKa = 5.24VKK58 pKa = 11.17GSDD61 pKa = 4.03GVFEE65 pKa = 4.96QYY67 pKa = 11.29DD68 pKa = 3.83SLCALRR74 pKa = 11.84KK75 pKa = 9.46MPDD78 pKa = 3.64DD79 pKa = 5.5DD80 pKa = 5.48YY81 pKa = 11.37MIDD84 pKa = 3.64LTGSEE89 pKa = 4.11QKK91 pKa = 10.73YY92 pKa = 10.38DD93 pKa = 3.79LPEE96 pKa = 4.04VTDD99 pKa = 3.55MTKK102 pKa = 10.73EE103 pKa = 4.1GGQQ106 pKa = 3.24

Molecular weight: 11.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M4YJZ0|M4YJZ0_THEXX Mevalonate kinase OS=Thermoplasmatales archaeon (strain BRNA1) OX=1054217 GN=TALC_00436 PE=3 SV=1
MM1 pKa = 6.86TVKK4 pKa = 10.29SEE6 pKa = 4.0RR7 pKa = 11.84GRR9 pKa = 11.84RR10 pKa = 11.84RR11 pKa = 11.84YY12 pKa = 9.69CAFRR16 pKa = 11.84TDD18 pKa = 3.38PSTTRR23 pKa = 11.84EE24 pKa = 3.91TLIPRR29 pKa = 11.84LPKK32 pKa = 9.62DD33 pKa = 3.17HH34 pKa = 7.04RR35 pKa = 11.84FKK37 pKa = 11.1VIQCAGGMAAIRR49 pKa = 11.84CSPEE53 pKa = 4.15DD54 pKa = 3.61VEE56 pKa = 4.47EE57 pKa = 4.37CAAAMKK63 pKa = 10.47RR64 pKa = 11.84ADD66 pKa = 4.0PSSEE70 pKa = 3.83MVRR73 pKa = 11.84VSGTIRR79 pKa = 11.84TLRR82 pKa = 11.84DD83 pKa = 3.06RR84 pKa = 11.84YY85 pKa = 10.69SVLRR89 pKa = 11.84ANAPPRR95 pKa = 11.84PPRR98 pKa = 11.84KK99 pKa = 8.28GTPPVAVRR107 pKa = 11.84EE108 pKa = 4.28ARR110 pKa = 11.84KK111 pKa = 9.31KK112 pKa = 10.85APSDD116 pKa = 3.53DD117 pKa = 4.49SSIKK121 pKa = 10.06PP122 pKa = 3.48

Molecular weight: 13.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1528

0

1528

443297

14

2782

290.1

32.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.467 ± 0.077

1.665 ± 0.028

6.789 ± 0.052

6.717 ± 0.08

3.862 ± 0.043

8.051 ± 0.07

1.626 ± 0.027

6.811 ± 0.058

5.689 ± 0.073

7.956 ± 0.071

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.406 ± 0.048

3.46 ± 0.046

4.014 ± 0.037

2.316 ± 0.028

5.362 ± 0.072

6.287 ± 0.071

5.325 ± 0.073

7.853 ± 0.06

0.919 ± 0.02

3.422 ± 0.049
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski