Pseudoalteromonas phage XC

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 73 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G6XV45|A0A6G6XV45_9CAUD Uncharacterized protein OS=Pseudoalteromonas phage XC OX=2712934 PE=4 SV=1
MM1 pKa = 7.87AFTLGTVKK9 pKa = 10.69AYY11 pKa = 10.08GATGNDD17 pKa = 2.95ILIQAKK23 pKa = 9.53IDD25 pKa = 3.7AFADD29 pKa = 4.24TYY31 pKa = 11.92ACLTSSYY38 pKa = 9.27PQAIADD44 pKa = 5.06DD45 pKa = 3.93IANSYY50 pKa = 9.62IAGSLMSASGSTQVTSRR67 pKa = 11.84KK68 pKa = 9.69APNGASTNYY77 pKa = 9.58KK78 pKa = 8.47QGRR81 pKa = 11.84YY82 pKa = 9.14GDD84 pKa = 3.51SGEE87 pKa = 4.12YY88 pKa = 10.77DD89 pKa = 3.02NGLLANAYY97 pKa = 10.33LNDD100 pKa = 3.76YY101 pKa = 9.31NFCLPIDD108 pKa = 3.53RR109 pKa = 11.84SVFFIGVAGTTYY121 pKa = 10.99DD122 pKa = 4.02ADD124 pKa = 3.76NPQQ127 pKa = 2.83

Molecular weight: 13.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G6XU83|A0A6G6XU83_9CAUD Uncharacterized protein OS=Pseudoalteromonas phage XC OX=2712934 PE=4 SV=1
MM1 pKa = 7.47NNMSDD6 pKa = 3.95LSFTQTSRR14 pKa = 11.84AMSSSHH20 pKa = 6.79LSRR23 pKa = 11.84INHH26 pKa = 6.46EE27 pKa = 4.14YY28 pKa = 10.22RR29 pKa = 11.84PIWVIAKK36 pKa = 10.09ANNAKK41 pKa = 9.68PKK43 pKa = 10.17QVIDD47 pKa = 3.66RR48 pKa = 11.84RR49 pKa = 11.84AKK51 pKa = 8.72GWRR54 pKa = 11.84SNSTVFTGCC63 pKa = 3.86

Molecular weight: 7.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

73

0

73

14415

40

1320

197.5

22.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.846 ± 0.445

1.346 ± 0.173

6.604 ± 0.226

7.034 ± 0.222

4.037 ± 0.153

6.486 ± 0.177

1.769 ± 0.18

6.153 ± 0.255

7.347 ± 0.444

7.874 ± 0.362

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.65 ± 0.21

5.744 ± 0.207

3.101 ± 0.159

3.531 ± 0.186

3.926 ± 0.192

6.847 ± 0.265

5.897 ± 0.341

6.41 ± 0.239

1.443 ± 0.118

3.954 ± 0.189
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski