Propionicimonas paludicola

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Propionicimonas

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2964 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2A9CST5|A0A2A9CST5_9ACTN Pyruvate carboxylase OS=Propionicimonas paludicola OX=185243 GN=ATK74_2008 PE=4 SV=1
MM1 pKa = 7.54AGVDD5 pKa = 3.49PHH7 pKa = 8.42FEE9 pKa = 4.04EE10 pKa = 5.6LDD12 pKa = 3.3AWVSAGVRR20 pKa = 11.84QVVPIAEE27 pKa = 4.36LAGLFTPVYY36 pKa = 9.06DD37 pKa = 3.82QVSAAITQAGAVMVGPAYY55 pKa = 10.34AEE57 pKa = 4.1YY58 pKa = 10.12FAMPEE63 pKa = 3.91DD64 pKa = 4.09TVDD67 pKa = 3.33VEE69 pKa = 4.24IGFGIAEE76 pKa = 4.07PTAIDD81 pKa = 3.84GLNVRR86 pKa = 11.84QRR88 pKa = 11.84PATTAVVGTHH98 pKa = 5.97FGGYY102 pKa = 10.24DD103 pKa = 3.48SLDD106 pKa = 3.23EE107 pKa = 4.69SYY109 pKa = 11.67AEE111 pKa = 3.83LMPWLEE117 pKa = 4.23SQDD120 pKa = 3.76VALGDD125 pKa = 5.44SMFEE129 pKa = 4.15WYY131 pKa = 10.46LSEE134 pKa = 4.79PDD136 pKa = 3.59EE137 pKa = 4.78APEE140 pKa = 3.9NTVTKK145 pKa = 10.56LVFPLAA151 pKa = 4.15

Molecular weight: 16.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2A9CUZ0|A0A2A9CUZ0_9ACTN Uncharacterized protein OS=Propionicimonas paludicola OX=185243 GN=ATK74_2530 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SRR15 pKa = 11.84THH17 pKa = 6.18GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AIISARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84QGRR40 pKa = 11.84ARR42 pKa = 11.84LAGG45 pKa = 3.61

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2964

0

2964

985853

31

5968

332.6

35.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.443 ± 0.058

0.72 ± 0.013

5.584 ± 0.035

5.269 ± 0.049

2.973 ± 0.022

8.805 ± 0.035

1.855 ± 0.021

4.235 ± 0.035

2.373 ± 0.033

10.833 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.786 ± 0.021

2.148 ± 0.026

5.586 ± 0.034

3.227 ± 0.021

6.769 ± 0.051

5.963 ± 0.046

6.003 ± 0.068

8.686 ± 0.041

1.631 ± 0.022

2.109 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski