Teredinibacter turnerae (strain ATCC 39867 / T7901)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Cellvibrionaceae; Teredinibacter; Teredinibacter turnerae

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4249 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C5BKC5|C5BKC5_TERTT Uncharacterized protein OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=TERTU_2389 PE=4 SV=1
MM1 pKa = 7.48LPKK4 pKa = 10.04TYY6 pKa = 10.55LIGVAFGLLAVTAEE20 pKa = 4.26SATVCDD26 pKa = 3.97TVDD29 pKa = 3.37NDD31 pKa = 4.09GDD33 pKa = 4.0PFDD36 pKa = 3.79VGTYY40 pKa = 7.88GACGASSSDD49 pKa = 3.94LSGVWMIVSDD59 pKa = 4.28YY60 pKa = 11.14NLEE63 pKa = 3.9TSYY66 pKa = 11.37FGMTWNEE73 pKa = 3.83SRR75 pKa = 11.84RR76 pKa = 11.84QRR78 pKa = 11.84QTVQILDD85 pKa = 3.93NQDD88 pKa = 2.75GTITVSDD95 pKa = 4.45CGFLGYY101 pKa = 10.39GYY103 pKa = 10.07EE104 pKa = 4.36YY105 pKa = 10.67TLSTSANEE113 pKa = 3.85LTLVGDD119 pKa = 3.67QVVDD123 pKa = 4.52FSLQIVNNTQLSGSVVSRR141 pKa = 11.84ASVWGTSIDD150 pKa = 3.93VISNYY155 pKa = 10.68AEE157 pKa = 3.87ATKK160 pKa = 10.71LRR162 pKa = 11.84DD163 pKa = 3.12LTAPVVTLGDD173 pKa = 3.73LSSEE177 pKa = 4.09YY178 pKa = 11.3GPVDD182 pKa = 3.45KK183 pKa = 11.09KK184 pKa = 11.56KK185 pKa = 10.08MLNNWQIACFKK196 pKa = 8.95NTAYY200 pKa = 10.52DD201 pKa = 3.27IEE203 pKa = 4.4YY204 pKa = 8.85TYY206 pKa = 11.53LDD208 pKa = 3.66GSTEE212 pKa = 3.74RR213 pKa = 11.84RR214 pKa = 11.84VYY216 pKa = 11.12EE217 pKa = 4.01NTDD220 pKa = 3.12LYY222 pKa = 11.26AAEE225 pKa = 4.25SVEE228 pKa = 4.18NGIAGDD234 pKa = 3.89ALVLFSISEE243 pKa = 3.95PTLNEE248 pKa = 3.53EE249 pKa = 4.87LRR251 pKa = 11.84AEE253 pKa = 4.18FNLAEE258 pKa = 4.41RR259 pKa = 11.84NDD261 pKa = 3.91VNGEE265 pKa = 3.91ADD267 pKa = 3.79NVNIDD272 pKa = 3.56YY273 pKa = 11.13VADD276 pKa = 4.16SNSHH280 pKa = 5.99LSGIASIQDD289 pKa = 3.07EE290 pKa = 4.21DD291 pKa = 4.09RR292 pKa = 11.84ALVSADD298 pKa = 2.58IKK300 pKa = 11.41FNFSLL305 pKa = 4.22

Molecular weight: 33.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C5BJ77|C5BJ77_TERTT Uncharacterized protein OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=TERTU_4491 PE=4 SV=1
MM1 pKa = 7.73HH2 pKa = 7.28NNQHH6 pKa = 5.34QAQPLRR12 pKa = 11.84GLDD15 pKa = 3.4LHH17 pKa = 6.91FGASRR22 pKa = 11.84LYY24 pKa = 10.51CGPCAGRR31 pKa = 11.84YY32 pKa = 7.57KK33 pKa = 10.62ASKK36 pKa = 10.38ASILKK41 pKa = 10.14RR42 pKa = 11.84YY43 pKa = 9.88VLVKK47 pKa = 9.19RR48 pKa = 11.84CRR50 pKa = 11.84VVRR53 pKa = 11.84DD54 pKa = 3.48LVAA57 pKa = 5.17

Molecular weight: 6.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4249

0

4249

1491791

37

7446

351.1

38.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.759 ± 0.046

1.104 ± 0.015

5.747 ± 0.042

6.066 ± 0.037

4.055 ± 0.025

7.201 ± 0.057

2.186 ± 0.02

5.505 ± 0.028

4.158 ± 0.037

10.283 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.226 ± 0.019

4.092 ± 0.034

4.315 ± 0.029

4.197 ± 0.029

5.281 ± 0.036

6.902 ± 0.055

5.397 ± 0.036

7.088 ± 0.03

1.361 ± 0.017

3.076 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski