Bifidobacterium mongoliense DSM 21395

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium mongoliense

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1798 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A087C160|A0A087C160_9BIFI Polyprenyl synthetase OS=Bifidobacterium mongoliense DSM 21395 OX=1437603 GN=BMON_0566 PE=3 SV=1
MM1 pKa = 7.13AQDD4 pKa = 3.51YY5 pKa = 10.08DD6 pKa = 3.82SPRR9 pKa = 11.84NKK11 pKa = 10.87DD12 pKa = 3.25EE13 pKa = 5.64DD14 pKa = 4.36DD15 pKa = 4.47EE16 pKa = 4.64SLQALGKK23 pKa = 10.46GSQNTGGEE31 pKa = 4.16DD32 pKa = 3.6DD33 pKa = 5.2DD34 pKa = 4.91EE35 pKa = 4.35NAIAEE40 pKa = 4.35DD41 pKa = 4.23YY42 pKa = 9.11EE43 pKa = 5.05LPGADD48 pKa = 5.03LSNEE52 pKa = 4.1DD53 pKa = 3.77ASVTVIPMQGDD64 pKa = 3.48EE65 pKa = 5.44FICSEE70 pKa = 4.23CFLVKK75 pKa = 10.28HH76 pKa = 6.48RR77 pKa = 11.84SQLAYY82 pKa = 7.08TTADD86 pKa = 3.42GQPVCKK92 pKa = 10.15EE93 pKa = 3.94CAAA96 pKa = 4.21

Molecular weight: 10.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A087C1L1|A0A087C1L1_9BIFI Chromosome partitioning protein OS=Bifidobacterium mongoliense DSM 21395 OX=1437603 GN=BMON_1257 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84HH13 pKa = 4.83MKK15 pKa = 9.27HH16 pKa = 5.56GFRR19 pKa = 11.84VRR21 pKa = 11.84MRR23 pKa = 11.84TRR25 pKa = 11.84AGRR28 pKa = 11.84ALINRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84GKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.92SLSAA44 pKa = 3.86

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1798

0

1798

621834

31

1779

345.8

37.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.143 ± 0.07

0.86 ± 0.019

6.637 ± 0.052

5.089 ± 0.063

3.231 ± 0.038

8.432 ± 0.054

2.524 ± 0.031

5.112 ± 0.042

3.131 ± 0.057

8.877 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.681 ± 0.025

2.864 ± 0.036

4.804 ± 0.037

3.419 ± 0.033

6.851 ± 0.068

6.383 ± 0.049

6.177 ± 0.048

7.895 ± 0.048

1.363 ± 0.024

2.524 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski