Francolinus leucoscepus papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyoepsilonpapillomavirus; Dyoepsilonpapillomavirus 1

Average proteome isoelectric point is 7.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C6ZDA0|C6ZDA0_9PAPI E1 OS=Francolinus leucoscepus papillomavirus 1 OX=485362 GN=E1 PE=4 SV=1
MM1 pKa = 7.89WLPDD5 pKa = 3.57IEE7 pKa = 4.74VVIALDD13 pKa = 3.77SDD15 pKa = 3.6ISSDD19 pKa = 5.09SDD21 pKa = 4.53DD22 pKa = 5.12DD23 pKa = 4.94DD24 pKa = 5.93SNSTTSTDD32 pKa = 3.31LDD34 pKa = 3.83DD35 pKa = 4.34AFGYY39 pKa = 10.62GWTFDD44 pKa = 4.1CEE46 pKa = 4.02TGRR49 pKa = 11.84ILICSEE55 pKa = 3.65QMQPSEE61 pKa = 5.24DD62 pKa = 3.82EE63 pKa = 4.89DD64 pKa = 4.28GSEE67 pKa = 4.1ASTVPAEE74 pKa = 4.33DD75 pKa = 4.48ALLHH79 pKa = 6.76DD80 pKa = 4.59IAVSGWTCAYY90 pKa = 9.47CASTLTAGEE99 pKa = 4.11IDD101 pKa = 3.45LHH103 pKa = 6.09GALDD107 pKa = 3.76EE108 pKa = 4.52EE109 pKa = 4.92EE110 pKa = 5.39CKK112 pKa = 10.86GLCNTCYY119 pKa = 9.89VGGRR123 pKa = 11.84LEE125 pKa = 4.32HH126 pKa = 6.9LFDD129 pKa = 5.16IDD131 pKa = 3.17II132 pKa = 4.58

Molecular weight: 14.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C6ZDA4|C6ZDA4_9PAPI L2 OS=Francolinus leucoscepus papillomavirus 1 OX=485362 GN=L2 PE=4 SV=1
MM1 pKa = 6.67TTLPSSGSRR10 pKa = 11.84GPVGRR15 pKa = 11.84MRR17 pKa = 11.84RR18 pKa = 11.84GCGIGKK24 pKa = 9.69KK25 pKa = 8.51VTDD28 pKa = 3.51THH30 pKa = 4.87TTILSGRR37 pKa = 11.84TRR39 pKa = 11.84QIGIVGAVRR48 pKa = 11.84RR49 pKa = 11.84LGGFWQGGGDD59 pKa = 3.5SVLPQLQDD67 pKa = 3.06TLTRR71 pKa = 11.84PPHH74 pKa = 4.18QTRR77 pKa = 11.84PRR79 pKa = 11.84RR80 pKa = 11.84PSDD83 pKa = 3.05PALRR87 pKa = 11.84HH88 pKa = 5.83PLPEE92 pKa = 3.89AVRR95 pKa = 11.84HH96 pKa = 4.54VRR98 pKa = 11.84GLGLRR103 pKa = 11.84VVSEE107 pKa = 3.98AFGRR111 pKa = 11.84PTSVDD116 pKa = 2.76ARR118 pKa = 11.84QPSVDD123 pKa = 3.74GVVHH127 pKa = 6.46GCSSS131 pKa = 3.13

Molecular weight: 13.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2594

82

658

324.3

35.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.669 ± 0.502

2.043 ± 0.454

6.515 ± 0.6

5.089 ± 0.477

3.547 ± 0.493

8.173 ± 0.719

2.197 ± 0.207

3.894 ± 0.315

3.045 ± 0.762

8.635 ± 0.589

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.581 ± 0.301

2.814 ± 0.523

8.096 ± 1.075

4.009 ± 0.394

8.019 ± 0.842

7.016 ± 0.324

7.093 ± 0.73

6.823 ± 0.457

1.542 ± 0.19

3.2 ± 0.522
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski