Faeces associated gemycircularvirus 5

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus geras2; Gerygone associated gemycircularvirus 2

Average proteome isoelectric point is 7.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|T1YRW5|T1YRW5_9VIRU Capsid protein OS=Faeces associated gemycircularvirus 5 OX=1391034 PE=4 SV=1
MM1 pKa = 7.34TFILNARR8 pKa = 11.84YY9 pKa = 8.98FLVTYY14 pKa = 7.78PQSDD18 pKa = 4.04GLDD21 pKa = 2.95EE22 pKa = 4.22WAVNDD27 pKa = 3.93HH28 pKa = 6.47FGSLGAEE35 pKa = 3.91CIVARR40 pKa = 11.84EE41 pKa = 3.93NHH43 pKa = 5.82AVRR46 pKa = 11.84GTHH49 pKa = 6.25LHH51 pKa = 5.32VFCDD55 pKa = 4.88FGRR58 pKa = 11.84KK59 pKa = 8.2FRR61 pKa = 11.84SRR63 pKa = 11.84RR64 pKa = 11.84ADD66 pKa = 3.04IFDD69 pKa = 3.3VGGFHH74 pKa = 7.62PNIEE78 pKa = 3.93RR79 pKa = 11.84SKK81 pKa = 9.8RR82 pKa = 11.84NPRR85 pKa = 11.84KK86 pKa = 9.72GALYY90 pKa = 10.12ACKK93 pKa = 10.51DD94 pKa = 3.31GDD96 pKa = 3.9IVAGGLDD103 pKa = 3.83VPGLATSIVSAAQDD117 pKa = 3.39PGATLVCAEE126 pKa = 4.19SQRR129 pKa = 11.84EE130 pKa = 4.04FFEE133 pKa = 4.36LAEE136 pKa = 5.66DD137 pKa = 3.75ICPWDD142 pKa = 5.07LITKK146 pKa = 8.77FGSMHH151 pKa = 7.37AYY153 pKa = 10.05AKK155 pKa = 9.95WKK157 pKa = 10.06FPEE160 pKa = 4.06LAEE163 pKa = 4.64PYY165 pKa = 9.08EE166 pKa = 4.38NPAGFTLADD175 pKa = 3.64GAFPDD180 pKa = 3.96LVSWRR185 pKa = 11.84TGALEE190 pKa = 3.52HH191 pKa = 6.61SGRR194 pKa = 11.84IKK196 pKa = 10.88SLVLIGDD203 pKa = 4.37ALTGKK208 pKa = 6.14TTWARR213 pKa = 11.84MLGNHH218 pKa = 7.21LYY220 pKa = 9.94MKK222 pKa = 10.07EE223 pKa = 3.82RR224 pKa = 11.84YY225 pKa = 8.1NAKK228 pKa = 9.6QASLADD234 pKa = 3.69GVDD237 pKa = 3.29YY238 pKa = 11.28GVIDD242 pKa = 5.66DD243 pKa = 3.81ISGGIKK249 pKa = 10.11YY250 pKa = 9.94FPHH253 pKa = 5.57WKK255 pKa = 9.37SWFGGQPHH263 pKa = 6.38IQVKK267 pKa = 9.99ILYY270 pKa = 9.57KK271 pKa = 10.14DD272 pKa = 3.3EE273 pKa = 5.6RR274 pKa = 11.84LVKK277 pKa = 9.28WGKK280 pKa = 8.58PLIWIANRR288 pKa = 11.84DD289 pKa = 3.54PRR291 pKa = 11.84DD292 pKa = 3.29QLRR295 pKa = 11.84DD296 pKa = 3.62MVSRR300 pKa = 11.84DD301 pKa = 3.53YY302 pKa = 11.67SEE304 pKa = 4.38EE305 pKa = 3.73QCNNDD310 pKa = 3.83VYY312 pKa = 10.91WMEE315 pKa = 4.11GNAIFVDD322 pKa = 3.97IRR324 pKa = 11.84QSSIISHH331 pKa = 6.89ANTEE335 pKa = 4.12

Molecular weight: 37.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|T1YRW5|T1YRW5_9VIRU Capsid protein OS=Faeces associated gemycircularvirus 5 OX=1391034 PE=4 SV=1
MM1 pKa = 7.78AYY3 pKa = 9.79RR4 pKa = 11.84RR5 pKa = 11.84KK6 pKa = 10.07SYY8 pKa = 10.46SSRR11 pKa = 11.84ARR13 pKa = 11.84RR14 pKa = 11.84PIGRR18 pKa = 11.84SAKK21 pKa = 10.01RR22 pKa = 11.84GGARR26 pKa = 11.84RR27 pKa = 11.84RR28 pKa = 11.84YY29 pKa = 5.34PTKK32 pKa = 10.21KK33 pKa = 8.56RR34 pKa = 11.84TYY36 pKa = 8.62RR37 pKa = 11.84KK38 pKa = 9.1NRR40 pKa = 11.84AMSTRR45 pKa = 11.84TILNKK50 pKa = 9.28TSRR53 pKa = 11.84KK54 pKa = 8.91KK55 pKa = 10.61RR56 pKa = 11.84NGMLTWANTSTSGTSIPNVATNYY79 pKa = 10.18FLTGNLGGRR88 pKa = 11.84SIWCATAQDD97 pKa = 4.27LTVQDD102 pKa = 4.27GSFGTVALAAARR114 pKa = 11.84TSTSCYY120 pKa = 8.69MKK122 pKa = 10.59GLSEE126 pKa = 5.06HH127 pKa = 6.62IRR129 pKa = 11.84IQTSTGLPWFWRR141 pKa = 11.84RR142 pKa = 11.84ICFTLKK148 pKa = 10.67GDD150 pKa = 3.82DD151 pKa = 3.83LFRR154 pKa = 11.84FSTSDD159 pKa = 3.31TPTSTSNRR167 pKa = 11.84YY168 pKa = 9.6LDD170 pKa = 3.69TTGGMQRR177 pKa = 11.84LFFNEE182 pKa = 3.79LNNAQSNTINNHH194 pKa = 5.19DD195 pKa = 4.5AIIFKK200 pKa = 9.9GAKK203 pKa = 9.23GIDD206 pKa = 3.34WIDD209 pKa = 4.2YY210 pKa = 9.29IVAPIDD216 pKa = 3.37TSRR219 pKa = 11.84INLKK223 pKa = 9.81YY224 pKa = 10.93DD225 pKa = 2.84KK226 pKa = 10.3VTLLRR231 pKa = 11.84SGNANGTIKK240 pKa = 10.19EE241 pKa = 4.03AKK243 pKa = 8.93LWHH246 pKa = 6.09GMNKK250 pKa = 9.33NLQYY254 pKa = 11.48DD255 pKa = 3.82DD256 pKa = 5.66DD257 pKa = 4.59EE258 pKa = 6.84SGDD261 pKa = 4.01KK262 pKa = 10.86EE263 pKa = 4.46STSYY267 pKa = 11.12TSVDD271 pKa = 3.4SKK273 pKa = 11.23IGMGDD278 pKa = 3.74YY279 pKa = 10.75FVMDD283 pKa = 3.84MFYY286 pKa = 10.52PGAGGAAADD295 pKa = 4.34IILVQANSTLYY306 pKa = 9.1WHH308 pKa = 7.05EE309 pKa = 4.08KK310 pKa = 9.32

Molecular weight: 34.78 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

645

310

335

322.5

36.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.372 ± 0.433

1.395 ± 0.293

6.977 ± 0.582

3.721 ± 1.225

4.341 ± 0.544

8.527 ± 0.096

2.326 ± 0.711

6.202 ± 0.05

5.736 ± 0.491

6.977 ± 0.36

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.326 ± 0.396

5.116 ± 0.917

3.256 ± 0.685

2.481 ± 0.153

7.287 ± 0.755

7.287 ± 1.198

6.822 ± 2.403

4.186 ± 1.102

2.636 ± 0.259

4.031 ± 0.333
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski