Halorhabdus sp. CBA1104

Taxonomy: cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halorhabdus; unclassified Halorhabdus

Average proteome isoelectric point is 4.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2453 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A650A552|A0A650A552_9EURY 30S ribosomal protein S15 OS=Halorhabdus sp. CBA1104 OX=1380432 GN=rps15 PE=3 SV=1
MM1 pKa = 7.86DD2 pKa = 5.89RR3 pKa = 11.84NPGLWLAVSIIVGIFLAVQLGALALVEE30 pKa = 4.08PLKK33 pKa = 11.06GAGLQPVEE41 pKa = 5.21DD42 pKa = 4.5PQDD45 pKa = 3.65PTNSLLYY52 pKa = 10.06ILAILVMTGVMLAAFRR68 pKa = 11.84YY69 pKa = 8.13NGEE72 pKa = 3.57WAIRR76 pKa = 11.84GLIVLTGVYY85 pKa = 10.01ISWLVFSILVPPVVTLPVAGGVHH108 pKa = 5.6VLAGAGAIAIGGGLLVYY125 pKa = 9.25PEE127 pKa = 3.78WWVIDD132 pKa = 3.21IAGAVMGAGAAGLFGITFGVLPALVLLTVLAVYY165 pKa = 9.96DD166 pKa = 4.71AISVYY171 pKa = 9.27GTEE174 pKa = 4.41HH175 pKa = 6.88MLTLAEE181 pKa = 4.64GVMDD185 pKa = 4.65LNVPVVLVAPTTLGYY200 pKa = 10.92SFIDD204 pKa = 4.18DD205 pKa = 5.0DD206 pKa = 5.01GPMDD210 pKa = 3.71GTEE213 pKa = 4.02SAEE216 pKa = 4.34TEE218 pKa = 4.13TAQQNSEE225 pKa = 4.75DD226 pKa = 4.14GDD228 pKa = 3.88TDD230 pKa = 4.61AEE232 pKa = 4.33DD233 pKa = 4.35ASFDD237 pKa = 4.23DD238 pKa = 4.99RR239 pKa = 11.84DD240 pKa = 3.57ALFIGLGDD248 pKa = 3.66AVVPTVLVASAAFFAPASVPTVGIGGFTTVLPAATAMVGTFLGLAVLLWMVLKK301 pKa = 10.74GRR303 pKa = 11.84AHH305 pKa = 7.15AGLPLLNGGVIGGYY319 pKa = 10.43LLGALASGLTLLEE332 pKa = 4.28ALGLAPYY339 pKa = 10.21LL340 pKa = 4.06

Molecular weight: 34.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A650A2S1|A0A650A2S1_9EURY FAD-dependent oxidoreductase OS=Halorhabdus sp. CBA1104 OX=1380432 GN=Hrd1104_04460 PE=4 SV=1
MM1 pKa = 7.43TLRR4 pKa = 11.84LEE6 pKa = 4.4GRR8 pKa = 11.84SVSGDD13 pKa = 3.28QFRR16 pKa = 11.84AASVRR21 pKa = 11.84AGSRR25 pKa = 11.84ANAFHH30 pKa = 6.64SFEE33 pKa = 4.42RR34 pKa = 11.84YY35 pKa = 9.2SVEE38 pKa = 4.21TFSSSCLARR47 pKa = 11.84VATKK51 pKa = 10.38LRR53 pKa = 11.84AGNLGSAQMLWKK65 pKa = 10.63YY66 pKa = 10.87NYY68 pKa = 7.05QTRR71 pKa = 11.84LRR73 pKa = 11.84TTTLTYY79 pKa = 10.73HH80 pKa = 7.01LADD83 pKa = 3.7SQSTFLIRR91 pKa = 11.84VIFLGAQKK99 pKa = 9.49TLLHH103 pKa = 6.93PDD105 pKa = 3.85CPVVSPSGGNMFKK118 pKa = 10.86VVGG121 pKa = 3.8

Molecular weight: 13.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2453

0

2453

727833

44

2571

296.7

32.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.897 ± 0.075

0.658 ± 0.014

8.299 ± 0.066

8.554 ± 0.073

3.259 ± 0.034

8.35 ± 0.057

1.976 ± 0.022

4.523 ± 0.032

1.794 ± 0.025

8.94 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.754 ± 0.024

2.293 ± 0.032

4.657 ± 0.03

2.977 ± 0.03

6.347 ± 0.051

5.479 ± 0.038

6.711 ± 0.047

8.804 ± 0.05

1.114 ± 0.02

2.614 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski