Bergeyella zoohelcum ATCC 43767

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Bergeyella; Bergeyella zoohelcum

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2120 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K1MLF8|K1MLF8_9FLAO Uncharacterized protein OS=Bergeyella zoohelcum ATCC 43767 OX=883096 GN=HMPREF9699_01227 PE=4 SV=1
MM1 pKa = 7.73AIIITDD7 pKa = 3.35EE8 pKa = 4.75CINCGACEE16 pKa = 4.03PEE18 pKa = 4.51CPNNAIYY25 pKa = 10.45EE26 pKa = 4.24GAIDD30 pKa = 3.9WKK32 pKa = 11.13ASDD35 pKa = 3.99GTSLSGTVTFDD46 pKa = 3.45SGLTVDD52 pKa = 5.19ADD54 pKa = 3.87APQEE58 pKa = 4.51PISDD62 pKa = 3.77DD63 pKa = 3.97YY64 pKa = 11.95YY65 pKa = 11.27FIVPDD70 pKa = 3.79KK71 pKa = 10.54CTEE74 pKa = 3.89CKK76 pKa = 10.46GFHH79 pKa = 6.8EE80 pKa = 5.19EE81 pKa = 4.05PQCAAVCPVDD91 pKa = 4.07CCVPDD96 pKa = 3.7EE97 pKa = 4.37NRR99 pKa = 11.84VEE101 pKa = 4.24SEE103 pKa = 4.23DD104 pKa = 3.55VLLSRR109 pKa = 11.84KK110 pKa = 9.79AFLHH114 pKa = 6.77AEE116 pKa = 4.08

Molecular weight: 12.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K1M666|K1M666_9FLAO Uncharacterized protein OS=Bergeyella zoohelcum ATCC 43767 OX=883096 GN=HMPREF9699_00798 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.55RR3 pKa = 11.84TFQPSEE9 pKa = 3.58RR10 pKa = 11.84KK11 pKa = 9.37KK12 pKa = 10.2RR13 pKa = 11.84NKK15 pKa = 9.71HH16 pKa = 4.09GFRR19 pKa = 11.84EE20 pKa = 4.33RR21 pKa = 11.84MSTPNGRR28 pKa = 11.84RR29 pKa = 11.84VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.98GRR39 pKa = 11.84KK40 pKa = 8.81SLTVSSARR48 pKa = 11.84AKK50 pKa = 10.4RR51 pKa = 3.45

Molecular weight: 5.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2120

0

2120

671449

20

2343

316.7

35.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.543 ± 0.047

0.73 ± 0.015

4.999 ± 0.035

7.014 ± 0.059

5.244 ± 0.045

6.38 ± 0.049

2.063 ± 0.026

7.932 ± 0.056

8.224 ± 0.059

8.957 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.51 ± 0.025

5.844 ± 0.054

3.389 ± 0.031

3.867 ± 0.035

3.578 ± 0.036

6.054 ± 0.043

5.495 ± 0.043

6.059 ± 0.044

1.017 ± 0.019

4.101 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski