Kadipiro virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Reoviridae; Sedoreovirinae; Seadornavirus

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9YWP6|Q9YWP6_9REOV Vp8 OS=Kadipiro virus OX=104580 PE=4 SV=1
MM1 pKa = 7.57SNIHH5 pKa = 6.96CYY7 pKa = 10.71GSDD10 pKa = 3.19PSEE13 pKa = 3.75GHH15 pKa = 5.19FCIYY19 pKa = 10.3RR20 pKa = 11.84FDD22 pKa = 3.73EE23 pKa = 4.74GQPFTVKK30 pKa = 10.24FRR32 pKa = 11.84QKK34 pKa = 11.03GKK36 pKa = 8.66IQHH39 pKa = 6.51IEE41 pKa = 3.92LEE43 pKa = 4.09NSIGHH48 pKa = 6.4NGAINYY54 pKa = 9.5GSIFDD59 pKa = 4.17TIKK62 pKa = 10.46YY63 pKa = 5.94FTSIVGLTLINNNMTIDD80 pKa = 4.02LNSVAVDD87 pKa = 3.06NRR89 pKa = 11.84FRR91 pKa = 11.84GNATMVALKK100 pKa = 10.85CNVLGNLFLKK110 pKa = 10.67KK111 pKa = 9.87IVSSDD116 pKa = 3.29LQLTLKK122 pKa = 10.54FYY124 pKa = 10.46YY125 pKa = 10.14NKK127 pKa = 10.16QIRR130 pKa = 11.84YY131 pKa = 9.22DD132 pKa = 3.72VFAGMYY138 pKa = 10.57GLINLRR144 pKa = 11.84NSKK147 pKa = 10.61FNDD150 pKa = 2.77NAYY153 pKa = 10.51NYY155 pKa = 10.55GIIIEE160 pKa = 4.1QCYY163 pKa = 9.2PIKK166 pKa = 10.29DD167 pKa = 3.56LPMNKK172 pKa = 8.87ILAGLKK178 pKa = 10.33ALMLFHH184 pKa = 7.03EE185 pKa = 5.01HH186 pKa = 6.16TNCIHH191 pKa = 6.91GDD193 pKa = 3.96CNPSNIMCDD202 pKa = 2.74KK203 pKa = 9.19MGNVKK208 pKa = 9.99IVDD211 pKa = 3.76PASLVTRR218 pKa = 11.84VVTYY222 pKa = 10.47INEE225 pKa = 4.24YY226 pKa = 10.8YY227 pKa = 10.58KK228 pKa = 11.0DD229 pKa = 3.92LTPKK233 pKa = 10.39SEE235 pKa = 3.85VGAYY239 pKa = 10.09LLSCFEE245 pKa = 4.27IVSDD249 pKa = 4.56LRR251 pKa = 11.84KK252 pKa = 10.11LPLEE256 pKa = 4.35KK257 pKa = 10.18IFIKK261 pKa = 10.29RR262 pKa = 11.84GYY264 pKa = 10.22LGLPEE269 pKa = 4.22YY270 pKa = 11.08ADD272 pKa = 4.27DD273 pKa = 4.77GGINAIDD280 pKa = 4.3FLTSLQDD287 pKa = 3.45GLTTHH292 pKa = 6.96SDD294 pKa = 3.29LMSAIAGVPFDD305 pKa = 4.99GLLANNEE312 pKa = 4.37YY313 pKa = 10.21IDD315 pKa = 6.08DD316 pKa = 4.48DD317 pKa = 5.67LSDD320 pKa = 3.89NEE322 pKa = 4.82CNVNLDD328 pKa = 3.56AGIDD332 pKa = 3.48NLEE335 pKa = 4.11FNNLDD340 pKa = 3.39VDD342 pKa = 4.73DD343 pKa = 5.38SDD345 pKa = 5.54SEE347 pKa = 4.3

Molecular weight: 38.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9YYS1|Q9YYS1_9REOV Vp12 OS=Kadipiro virus OX=104580 PE=4 SV=1
MM1 pKa = 7.61SNARR5 pKa = 11.84YY6 pKa = 10.52NMISAVSASGCKK18 pKa = 9.02NDD20 pKa = 5.41KK21 pKa = 9.72PFCVHH26 pKa = 6.18KK27 pKa = 10.23VVAVIVIIVSSGITVVNQIGQRR49 pKa = 11.84KK50 pKa = 9.27LSTDD54 pKa = 3.39DD55 pKa = 3.91YY56 pKa = 11.18FVLSLVCDD64 pKa = 5.21AISNIIVVGLSVVGMTASSKK84 pKa = 9.13TKK86 pKa = 10.33QVLTDD91 pKa = 3.42GGEE94 pKa = 3.95NAIEE98 pKa = 4.13LNHH101 pKa = 5.4MPKK104 pKa = 10.3RR105 pKa = 11.84IVKK108 pKa = 10.16KK109 pKa = 10.41LLKK112 pKa = 10.32EE113 pKa = 3.81EE114 pKa = 4.39AKK116 pKa = 10.99NGVDD120 pKa = 4.03FVKK123 pKa = 10.91SIGKK127 pKa = 8.91DD128 pKa = 3.12LKK130 pKa = 11.61SNDD133 pKa = 3.66NKK135 pKa = 10.2PDD137 pKa = 3.49PSAPPKK143 pKa = 10.14YY144 pKa = 10.19EE145 pKa = 4.68KK146 pKa = 9.66IDD148 pKa = 3.41EE149 pKa = 4.27SFEE152 pKa = 4.34LKK154 pKa = 10.62SEE156 pKa = 4.19FAGKK160 pKa = 10.16SLITDD165 pKa = 3.07NRR167 pKa = 11.84TGQSFIVTSDD177 pKa = 3.23LVKK180 pKa = 10.48PLILEE185 pKa = 4.23SRR187 pKa = 11.84SQSS190 pKa = 3.15

Molecular weight: 20.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12

0

12

6305

190

1223

525.4

58.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.376 ± 0.457

1.427 ± 0.199

6.693 ± 0.322

5.155 ± 0.27

3.759 ± 0.263

5.583 ± 0.203

2.094 ± 0.228

7.407 ± 0.298

6.233 ± 0.468

9.437 ± 0.373

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.617 ± 0.223

6.503 ± 0.508

3.236 ± 0.248

2.205 ± 0.138

5.044 ± 0.46

8.374 ± 0.448

5.757 ± 0.293

7.423 ± 0.533

0.508 ± 0.078

4.171 ± 0.341
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski