Ctenophore-associated circular genome 4

Taxonomy: Viruses; Satellites; DNA satellites; Single stranded DNA satellites

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A141MJB6|A0A141MJB6_9VIRU ATP-dependent helicase Rep OS=Ctenophore-associated circular genome 4 OX=1778573 PE=3 SV=1
MM1 pKa = 7.4VRR3 pKa = 11.84EE4 pKa = 4.09SAAVGWCFTLNNPTDD19 pKa = 3.79EE20 pKa = 4.61EE21 pKa = 4.42VDD23 pKa = 3.44NLNRR27 pKa = 11.84ILDD30 pKa = 4.04GDD32 pKa = 3.9QIKK35 pKa = 10.32YY36 pKa = 10.59AIYY39 pKa = 10.06QKK41 pKa = 9.61EE42 pKa = 4.18TGTPHH47 pKa = 5.6LQGYY51 pKa = 9.44LEE53 pKa = 4.22VSRR56 pKa = 11.84KK57 pKa = 7.75QRR59 pKa = 11.84LVGVKK64 pKa = 10.1RR65 pKa = 11.84LLQTEE70 pKa = 4.27RR71 pKa = 11.84VHH73 pKa = 7.75LEE75 pKa = 3.5KK76 pKa = 10.81RR77 pKa = 11.84KK78 pKa = 8.48GTRR81 pKa = 11.84IQARR85 pKa = 11.84DD86 pKa = 3.54YY87 pKa = 10.96CRR89 pKa = 11.84KK90 pKa = 8.4TEE92 pKa = 4.01GRR94 pKa = 11.84LADD97 pKa = 3.54PVVFGVWRR105 pKa = 11.84GDD107 pKa = 3.54SQTTGMSRR115 pKa = 11.84VIARR119 pKa = 11.84LEE121 pKa = 4.39GGCTLSEE128 pKa = 4.36VAAEE132 pKa = 4.19EE133 pKa = 4.22PQTFIQYY140 pKa = 10.77HH141 pKa = 5.66NGLAKK146 pKa = 9.92WYY148 pKa = 10.59ALVCTFARR156 pKa = 11.84EE157 pKa = 3.94TDD159 pKa = 3.42SPRR162 pKa = 11.84GVWIYY167 pKa = 10.6GPPGIGKK174 pKa = 5.65THH176 pKa = 7.62KK177 pKa = 10.51ARR179 pKa = 11.84ALASEE184 pKa = 4.07SLYY187 pKa = 11.13LKK189 pKa = 10.32SQNKK193 pKa = 7.34WWDD196 pKa = 3.47GYY198 pKa = 11.17AGQKK202 pKa = 10.02FVVLDD207 pKa = 3.81DD208 pKa = 4.44FDD210 pKa = 4.23RR211 pKa = 11.84QGICLGHH218 pKa = 5.82YY219 pKa = 10.12LKK221 pKa = 10.23IWSDD225 pKa = 2.95KK226 pKa = 9.4WSCTAEE232 pKa = 4.01IKK234 pKa = 10.9GGTVNLQHH242 pKa = 6.92EE243 pKa = 4.76KK244 pKa = 10.82FIVTSNYY251 pKa = 9.94HH252 pKa = 6.82PDD254 pKa = 3.88EE255 pKa = 4.77LWTDD259 pKa = 3.62DD260 pKa = 4.19PQLVDD265 pKa = 4.73AISRR269 pKa = 11.84RR270 pKa = 11.84FEE272 pKa = 4.34IIRR275 pKa = 11.84GEE277 pKa = 4.01SDD279 pKa = 3.41TNVTNWIVEE288 pKa = 4.11NN289 pKa = 4.0

Molecular weight: 33.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A141MJB6|A0A141MJB6_9VIRU ATP-dependent helicase Rep OS=Ctenophore-associated circular genome 4 OX=1778573 PE=3 SV=1
MM1 pKa = 7.4VRR3 pKa = 11.84EE4 pKa = 4.09SAAVGWCFTLNNPTDD19 pKa = 3.79EE20 pKa = 4.61EE21 pKa = 4.42VDD23 pKa = 3.44NLNRR27 pKa = 11.84ILDD30 pKa = 4.04GDD32 pKa = 3.9QIKK35 pKa = 10.32YY36 pKa = 10.59AIYY39 pKa = 10.06QKK41 pKa = 9.61EE42 pKa = 4.18TGTPHH47 pKa = 5.6LQGYY51 pKa = 9.44LEE53 pKa = 4.22VSRR56 pKa = 11.84KK57 pKa = 7.75QRR59 pKa = 11.84LVGVKK64 pKa = 10.1RR65 pKa = 11.84LLQTEE70 pKa = 4.27RR71 pKa = 11.84VHH73 pKa = 7.75LEE75 pKa = 3.5KK76 pKa = 10.81RR77 pKa = 11.84KK78 pKa = 8.48GTRR81 pKa = 11.84IQARR85 pKa = 11.84DD86 pKa = 3.54YY87 pKa = 10.96CRR89 pKa = 11.84KK90 pKa = 8.4TEE92 pKa = 4.01GRR94 pKa = 11.84LADD97 pKa = 3.54PVVFGVWRR105 pKa = 11.84GDD107 pKa = 3.54SQTTGMSRR115 pKa = 11.84VIARR119 pKa = 11.84LEE121 pKa = 4.39GGCTLSEE128 pKa = 4.36VAAEE132 pKa = 4.19EE133 pKa = 4.22PQTFIQYY140 pKa = 10.77HH141 pKa = 5.66NGLAKK146 pKa = 9.92WYY148 pKa = 10.59ALVCTFARR156 pKa = 11.84EE157 pKa = 3.94TDD159 pKa = 3.42SPRR162 pKa = 11.84GVWIYY167 pKa = 10.6GPPGIGKK174 pKa = 5.65THH176 pKa = 7.62KK177 pKa = 10.51ARR179 pKa = 11.84ALASEE184 pKa = 4.07SLYY187 pKa = 11.13LKK189 pKa = 10.32SQNKK193 pKa = 7.34WWDD196 pKa = 3.47GYY198 pKa = 11.17AGQKK202 pKa = 10.02FVVLDD207 pKa = 3.81DD208 pKa = 4.44FDD210 pKa = 4.23RR211 pKa = 11.84QGICLGHH218 pKa = 5.82YY219 pKa = 10.12LKK221 pKa = 10.23IWSDD225 pKa = 2.95KK226 pKa = 9.4WSCTAEE232 pKa = 4.01IKK234 pKa = 10.9GGTVNLQHH242 pKa = 6.92EE243 pKa = 4.76KK244 pKa = 10.82FIVTSNYY251 pKa = 9.94HH252 pKa = 6.82PDD254 pKa = 3.88EE255 pKa = 4.77LWTDD259 pKa = 3.62DD260 pKa = 4.19PQLVDD265 pKa = 4.73AISRR269 pKa = 11.84RR270 pKa = 11.84FEE272 pKa = 4.34IIRR275 pKa = 11.84GEE277 pKa = 4.01SDD279 pKa = 3.41TNVTNWIVEE288 pKa = 4.11NN289 pKa = 4.0

Molecular weight: 33.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

289

289

289

289.0

33.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.882 ± 0.0

2.076 ± 0.0

6.228 ± 0.0

6.92 ± 0.0

2.768 ± 0.0

8.304 ± 0.0

2.422 ± 0.0

5.536 ± 0.0

5.882 ± 0.0

7.958 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

0.692 ± 0.0

3.806 ± 0.0

3.114 ± 0.0

4.844 ± 0.0

7.266 ± 0.0

4.844 ± 0.0

6.92 ± 0.0

7.266 ± 0.0

3.46 ± 0.0

3.806 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski