Pacific flying fox faeces associated circular DNA virus-11

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 7.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A140CTV1|A0A140CTV1_9VIRU Putative capsid protein OS=Pacific flying fox faeces associated circular DNA virus-11 OX=1796006 PE=4 SV=1
MM1 pKa = 7.6SKK3 pKa = 10.4PSRR6 pKa = 11.84NFCFTLNNPDD16 pKa = 3.88DD17 pKa = 4.72EE18 pKa = 4.91YY19 pKa = 11.3TFFADD24 pKa = 4.35RR25 pKa = 11.84FPRR28 pKa = 11.84FQTQYY33 pKa = 11.43AIWQLEE39 pKa = 3.78AGEE42 pKa = 4.35NGTRR46 pKa = 11.84DD47 pKa = 3.4LQGYY51 pKa = 9.72LEE53 pKa = 4.8LSSPARR59 pKa = 11.84VSAFQSTTLKK69 pKa = 10.46GAHH72 pKa = 5.96FEE74 pKa = 4.12PRR76 pKa = 11.84KK77 pKa = 8.33GTRR80 pKa = 11.84AQARR84 pKa = 11.84DD85 pKa = 3.61YY86 pKa = 10.97CRR88 pKa = 11.84KK89 pKa = 10.0LDD91 pKa = 3.73TRR93 pKa = 11.84VDD95 pKa = 4.15GPWEE99 pKa = 4.03YY100 pKa = 10.5GTFGAGGQGRR110 pKa = 11.84RR111 pKa = 11.84SDD113 pKa = 3.93LEE115 pKa = 4.03AVEE118 pKa = 4.47QSIKK122 pKa = 10.55RR123 pKa = 11.84GASLAEE129 pKa = 3.83IAEE132 pKa = 4.18EE133 pKa = 4.19HH134 pKa = 5.18TTSFIKK140 pKa = 10.31YY141 pKa = 9.02ARR143 pKa = 11.84NISLTCEE150 pKa = 4.1ILCPTTPRR158 pKa = 11.84NPEE161 pKa = 4.09TPCEE165 pKa = 3.81VHH167 pKa = 6.93LYY169 pKa = 9.99HH170 pKa = 7.22GPSGCGKK177 pKa = 8.06TRR179 pKa = 11.84AITADD184 pKa = 3.45SLLQGSSVYY193 pKa = 10.05WKK195 pKa = 10.82DD196 pKa = 3.24NGKK199 pKa = 8.16WWDD202 pKa = 3.73GYY204 pKa = 10.13RR205 pKa = 11.84GHH207 pKa = 7.12TIVVADD213 pKa = 4.46DD214 pKa = 3.82FSGASMRR221 pKa = 11.84YY222 pKa = 8.67CDD224 pKa = 3.81FRR226 pKa = 11.84RR227 pKa = 11.84WFDD230 pKa = 3.61RR231 pKa = 11.84YY232 pKa = 8.57PCRR235 pKa = 11.84VEE237 pKa = 4.71RR238 pKa = 11.84KK239 pKa = 9.83GDD241 pKa = 3.54TTEE244 pKa = 4.34LVATRR249 pKa = 11.84FYY251 pKa = 10.73ISSTKK256 pKa = 10.65LPDD259 pKa = 3.37LWWDD263 pKa = 3.31RR264 pKa = 11.84SVVKK268 pKa = 10.05EE269 pKa = 3.98YY270 pKa = 11.06NWMEE274 pKa = 3.55IARR277 pKa = 11.84RR278 pKa = 11.84ITHH281 pKa = 6.2FHH283 pKa = 6.15TFDD286 pKa = 3.52EE287 pKa = 4.8EE288 pKa = 4.48TKK290 pKa = 10.41HH291 pKa = 5.19LHH293 pKa = 6.38SYY295 pKa = 9.46TGTDD299 pKa = 2.64QATALDD305 pKa = 4.28QYY307 pKa = 10.77CDD309 pKa = 3.65SINYY313 pKa = 7.57YY314 pKa = 10.43HH315 pKa = 6.76YY316 pKa = 11.5

Molecular weight: 36.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A140CTV1|A0A140CTV1_9VIRU Putative capsid protein OS=Pacific flying fox faeces associated circular DNA virus-11 OX=1796006 PE=4 SV=1
MM1 pKa = 7.36RR2 pKa = 11.84RR3 pKa = 11.84NYY5 pKa = 9.85RR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84SRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84SRR14 pKa = 11.84HH15 pKa = 4.28HH16 pKa = 6.16SKK18 pKa = 11.03YY19 pKa = 10.5NEE21 pKa = 4.03SQVFSITRR29 pKa = 11.84KK30 pKa = 6.99TWGTYY35 pKa = 8.28IQNTASNSTFWAGSLNASYY54 pKa = 11.38AKK56 pKa = 9.85TFTLGDD62 pKa = 3.61VPAVTEE68 pKa = 4.05FTNLFEE74 pKa = 4.72EE75 pKa = 4.42YY76 pKa = 9.43RR77 pKa = 11.84IVGIRR82 pKa = 11.84VTVNLDD88 pKa = 2.96TGINVQPTLDD98 pKa = 3.51YY99 pKa = 8.76GTWFMWVDD107 pKa = 3.48NDD109 pKa = 6.15DD110 pKa = 4.03GTQLDD115 pKa = 4.4PTTGSNFDD123 pKa = 3.97LVLQRR128 pKa = 11.84GRR130 pKa = 11.84VKK132 pKa = 10.12TFNGNDD138 pKa = 4.08GKK140 pKa = 10.92RR141 pKa = 11.84HH142 pKa = 4.66TMWVKK147 pKa = 9.89PMVSAEE153 pKa = 4.07YY154 pKa = 9.81YY155 pKa = 9.33RR156 pKa = 11.84ASGGVNAYY164 pKa = 9.37GPKK167 pKa = 9.24YY168 pKa = 10.54SPWLSTSNTGTPHH181 pKa = 6.2YY182 pKa = 10.45SFKK185 pKa = 10.34IWVRR189 pKa = 11.84NMTSNILGFNIMCKK203 pKa = 10.26YY204 pKa = 8.98YY205 pKa = 10.18LQFRR209 pKa = 11.84GVQQ212 pKa = 3.08

Molecular weight: 24.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

528

212

316

264.0

30.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.682 ± 1.067

1.894 ± 0.796

5.871 ± 0.909

4.735 ± 1.329

5.114 ± 0.042

7.386 ± 0.354

2.652 ± 0.428

3.788 ± 0.008

4.167 ± 0.044

5.682 ± 0.276

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.705 ± 0.63

4.924 ± 1.731

3.788 ± 0.272

3.409 ± 0.06

8.523 ± 0.018

7.386 ± 0.354

9.47 ± 0.508

4.924 ± 1.203

3.03 ± 0.152

5.871 ± 0.146
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski