Citrus chlorotic spot virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Dichorhavirus; Citrus chlorotic spot dichorhavirus

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W6AWK5|A0A1W6AWK5_9RHAB GDP polyribonucleotidyltransferase OS=Citrus chlorotic spot virus OX=1980624 GN=ORF6 PE=4 SV=1
MM1 pKa = 7.38ARR3 pKa = 11.84YY4 pKa = 9.95ADD6 pKa = 3.42VDD8 pKa = 3.91YY9 pKa = 11.07TSVLDD14 pKa = 4.22IYY16 pKa = 11.15SDD18 pKa = 3.82TPEE21 pKa = 4.1EE22 pKa = 4.22SQVASSAPTPVTYY35 pKa = 10.59SRR37 pKa = 11.84EE38 pKa = 3.99AAVAKK43 pKa = 10.04PIVTLEE49 pKa = 4.24APPDD53 pKa = 3.47THH55 pKa = 8.51ADD57 pKa = 3.7VITLFQTIMDD67 pKa = 4.4HH68 pKa = 6.67ANSRR72 pKa = 11.84MTKK75 pKa = 10.03KK76 pKa = 10.42DD77 pKa = 3.4LLVIMSLGFCLTPPGCEE94 pKa = 4.11GPSMWSVAQGAVVQPLSMPGITAVYY119 pKa = 10.03DD120 pKa = 3.49SRR122 pKa = 11.84AAAASSTMNIDD133 pKa = 3.59PDD135 pKa = 3.83EE136 pKa = 4.93GDD138 pKa = 3.35QAEE141 pKa = 4.87DD142 pKa = 3.45SQAPPDD148 pKa = 4.59DD149 pKa = 4.12EE150 pKa = 5.79DD151 pKa = 4.41AASQCRR157 pKa = 11.84AISYY161 pKa = 9.84ICLSLMRR168 pKa = 11.84LAVKK172 pKa = 10.22RR173 pKa = 11.84VEE175 pKa = 4.28TFMKK179 pKa = 9.07GTPQLVTAYY188 pKa = 9.41HH189 pKa = 6.84ILMGDD194 pKa = 3.88HH195 pKa = 6.95SPFLASFNYY204 pKa = 9.9SRR206 pKa = 11.84GLCSNISSLFNQCDD220 pKa = 3.53DD221 pKa = 3.59MKK223 pKa = 10.53RR224 pKa = 11.84TLAHH228 pKa = 6.13HH229 pKa = 6.47CAVADD234 pKa = 4.21EE235 pKa = 4.59SHH237 pKa = 6.51HH238 pKa = 6.25NNRR241 pKa = 11.84TVHH244 pKa = 5.82GPLRR248 pKa = 11.84FLILQHH254 pKa = 6.25MDD256 pKa = 3.32LNGMVPYY263 pKa = 10.95GMYY266 pKa = 10.71VDD268 pKa = 4.28MKK270 pKa = 10.73RR271 pKa = 11.84GLPLLKK277 pKa = 10.13PGTILTWLHH286 pKa = 6.46DD287 pKa = 4.11AQVASTLMLISKK299 pKa = 9.74INKK302 pKa = 9.17DD303 pKa = 3.07HH304 pKa = 7.64DD305 pKa = 3.87RR306 pKa = 11.84TDD308 pKa = 3.09KK309 pKa = 11.19ADD311 pKa = 3.88RR312 pKa = 11.84FWRR315 pKa = 11.84YY316 pKa = 8.93CRR318 pKa = 11.84CIDD321 pKa = 3.38PGFFIEE327 pKa = 4.58LQQSRR332 pKa = 11.84CYY334 pKa = 10.61ILIARR339 pKa = 11.84MADD342 pKa = 2.74ILVRR346 pKa = 11.84GGCVNVTEE354 pKa = 4.33YY355 pKa = 11.35SDD357 pKa = 3.56PKK359 pKa = 10.14KK360 pKa = 10.94AEE362 pKa = 4.23SIKK365 pKa = 11.14DD366 pKa = 3.45KK367 pKa = 11.68ANILANAEE375 pKa = 3.95RR376 pKa = 11.84FGIEE380 pKa = 4.96FMAAYY385 pKa = 8.96NALSGTSEE393 pKa = 4.09GAGPVARR400 pKa = 11.84ALASAAVGQPTRR412 pKa = 11.84RR413 pKa = 11.84ILVPRR418 pKa = 11.84NPRR421 pKa = 11.84PQPTVNVTSNPPPQRR436 pKa = 11.84VGALDD441 pKa = 5.28SMIQDD446 pKa = 3.43QSS448 pKa = 3.21

Molecular weight: 49.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W6AWK1|A0A1W6AWK1_9RHAB Movement protein OS=Citrus chlorotic spot virus OX=1980624 GN=ORF3 PE=4 SV=1
MM1 pKa = 7.14ATSSKK6 pKa = 9.51STEE9 pKa = 4.1EE10 pKa = 4.22LCTVMSVRR18 pKa = 11.84SRR20 pKa = 11.84VTLTSPSKK28 pKa = 10.66PPMDD32 pKa = 4.43AATIASMVKK41 pKa = 10.23AIGVMKK47 pKa = 10.6SKK49 pKa = 10.96ALTPEE54 pKa = 4.05GTEE57 pKa = 4.93VSGDD61 pKa = 3.2WQALITEE68 pKa = 5.0VARR71 pKa = 11.84QSKK74 pKa = 8.75PQVSGPFLTKK84 pKa = 10.48DD85 pKa = 3.47LEE87 pKa = 4.49SGNIYY92 pKa = 9.21TINMIIGGPLNVKK105 pKa = 10.0DD106 pKa = 4.13NNHH109 pKa = 5.33GRR111 pKa = 11.84VMTLRR116 pKa = 11.84SGPLYY121 pKa = 7.92DD122 pKa = 3.72TPHH125 pKa = 6.42YY126 pKa = 10.7SSNDD130 pKa = 3.04KK131 pKa = 10.73VDD133 pKa = 3.16IMLSSGKK140 pKa = 10.22ASVGISTSIATVKK153 pKa = 10.31RR154 pKa = 11.84PRR156 pKa = 11.84SSCEE160 pKa = 3.53KK161 pKa = 10.51LVNQYY166 pKa = 10.73IILPKK171 pKa = 10.57EE172 pKa = 4.51KK173 pKa = 9.88INPPAPRR180 pKa = 11.84PSGG183 pKa = 3.35

Molecular weight: 19.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3613

183

1874

602.2

67.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.757 ± 0.804

2.187 ± 0.184

6.061 ± 0.441

4.927 ± 0.335

2.851 ± 0.396

5.729 ± 0.405

3.211 ± 0.375

6.975 ± 0.478

5.84 ± 0.556

8.497 ± 0.488

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

4.318 ± 0.261

4.484 ± 0.284

4.761 ± 0.737

2.878 ± 0.479

5.369 ± 0.352

9.189 ± 0.542

5.231 ± 0.512

7.002 ± 0.378

1.605 ± 0.241

3.128 ± 0.377
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski