Capybara microvirus Cap3_SP_612

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W689|A0A4P8W689_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_612 OX=2585482 PE=4 SV=1
MM1 pKa = 7.73GILGVFRR8 pKa = 11.84TSSKK12 pKa = 10.86SRR14 pKa = 11.84IGEE17 pKa = 3.77INYY20 pKa = 9.34APSMTEE26 pKa = 3.78DD27 pKa = 3.07AHH29 pKa = 6.93LLSIEE34 pKa = 4.41QIVKK38 pKa = 10.22DD39 pKa = 3.64YY40 pKa = 11.33SRR42 pKa = 11.84GILHH46 pKa = 7.18PEE48 pKa = 4.01FNHH51 pKa = 6.4SAVYY55 pKa = 10.59DD56 pKa = 4.12DD57 pKa = 5.5GEE59 pKa = 4.54EE60 pKa = 3.85ISNVQNYY67 pKa = 10.44DD68 pKa = 3.48DD69 pKa = 4.59LTDD72 pKa = 4.41LFPNGVNSIYY82 pKa = 10.32HH83 pKa = 5.39LQDD86 pKa = 3.57RR87 pKa = 11.84EE88 pKa = 4.18PSSEE92 pKa = 4.0PQKK95 pKa = 10.84MNDD98 pKa = 3.38SAPEE102 pKa = 3.93SEE104 pKa = 4.67TNIEE108 pKa = 4.38TKK110 pKa = 10.91NEE112 pKa = 3.78

Molecular weight: 12.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W6G3|A0A4P8W6G3_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_612 OX=2585482 PE=3 SV=1
MM1 pKa = 7.78DD2 pKa = 6.31CIRR5 pKa = 11.84PFVKK9 pKa = 10.06TIGHH13 pKa = 6.48GLDD16 pKa = 3.35ANYY19 pKa = 10.13IPLPCGRR26 pKa = 11.84CLACRR31 pKa = 11.84VNYY34 pKa = 7.83TRR36 pKa = 11.84QWTQRR41 pKa = 11.84LLAEE45 pKa = 4.87SYY47 pKa = 10.23HH48 pKa = 6.33SKK50 pKa = 10.41NAYY53 pKa = 9.97FLTLTYY59 pKa = 10.62EE60 pKa = 4.41DD61 pKa = 3.82SCLPRR66 pKa = 11.84DD67 pKa = 4.7DD68 pKa = 5.2NDD70 pKa = 3.6NPCVCKK76 pKa = 10.3RR77 pKa = 11.84DD78 pKa = 3.12IQLFIKK84 pKa = 10.28RR85 pKa = 11.84LRR87 pKa = 11.84KK88 pKa = 9.56HH89 pKa = 6.31YY90 pKa = 9.24PDD92 pKa = 3.41SNIRR96 pKa = 11.84YY97 pKa = 8.58FLGSEE102 pKa = 4.15YY103 pKa = 11.03GEE105 pKa = 4.09EE106 pKa = 4.12TLRR109 pKa = 11.84PHH111 pKa = 5.56YY112 pKa = 10.23HH113 pKa = 6.81AIFYY117 pKa = 9.19NLPDD121 pKa = 3.61EE122 pKa = 6.35LIFQPQSAGGDD133 pKa = 3.01QWHH136 pKa = 5.97YY137 pKa = 10.72HH138 pKa = 6.91DD139 pKa = 5.6KK140 pKa = 9.44SQHH143 pKa = 5.11MINRR147 pKa = 11.84KK148 pKa = 9.49INDD151 pKa = 3.18YY152 pKa = 7.27WQKK155 pKa = 10.92GFIEE159 pKa = 4.29IDD161 pKa = 3.69PINRR165 pKa = 11.84QRR167 pKa = 11.84AEE169 pKa = 3.79YY170 pKa = 8.22CAKK173 pKa = 10.31YY174 pKa = 10.01FVFRR178 pKa = 11.84KK179 pKa = 9.97DD180 pKa = 3.22VEE182 pKa = 4.45QILVPNFNLMSRR194 pKa = 11.84KK195 pKa = 9.47PGIGYY200 pKa = 8.72QRR202 pKa = 11.84IDD204 pKa = 3.76EE205 pKa = 4.6IKK207 pKa = 10.97DD208 pKa = 2.99KK209 pKa = 11.03VRR211 pKa = 11.84YY212 pKa = 9.27YY213 pKa = 11.0NLNGMLTDD221 pKa = 3.49KK222 pKa = 10.31GTYY225 pKa = 9.21CAIPRR230 pKa = 11.84YY231 pKa = 9.3YY232 pKa = 10.27KK233 pKa = 10.7DD234 pKa = 3.26KK235 pKa = 10.59IYY237 pKa = 10.94SKK239 pKa = 9.86EE240 pKa = 3.82EE241 pKa = 3.68RR242 pKa = 11.84EE243 pKa = 4.11EE244 pKa = 3.94LFNRR248 pKa = 11.84YY249 pKa = 9.67LNMRR253 pKa = 11.84CTLSIEE259 pKa = 4.13EE260 pKa = 4.53IEE262 pKa = 4.51FNRR265 pKa = 11.84QKK267 pKa = 11.08LQGDD271 pKa = 3.92EE272 pKa = 4.69LEE274 pKa = 4.48EE275 pKa = 3.95SLIRR279 pKa = 11.84NMTFKK284 pKa = 10.84NKK286 pKa = 9.06KK287 pKa = 9.44RR288 pKa = 11.84KK289 pKa = 9.18LL290 pKa = 3.57

Molecular weight: 34.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1318

80

539

263.6

29.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.297 ± 1.151

1.29 ± 0.587

4.856 ± 0.614

7.056 ± 0.536

4.401 ± 0.772

6.222 ± 0.678

2.124 ± 0.363

6.753 ± 0.317

5.311 ± 0.737

7.891 ± 0.467

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.352 ± 0.152

7.891 ± 0.554

5.008 ± 0.461

4.021 ± 0.314

5.008 ± 0.943

6.601 ± 1.029

6.07 ± 1.123

4.552 ± 0.717

0.835 ± 0.116

5.463 ± 0.64
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski