Coregonus sp. balchen

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossocephalai; Clupeocephala; Euteleosteomorpha; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae;

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 41641 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6F9CRJ2|A0A6F9CRJ2_9TELE RING-type domain-containing protein OS=Coregonus sp. 'balchen' OX=861768 GN=CSTEINMANNI_LOCUS4562867 PE=4 SV=1
MM1 pKa = 7.97EE2 pKa = 5.72DD3 pKa = 3.01NCRR6 pKa = 11.84LVPNKK11 pKa = 10.09DD12 pKa = 3.47QQNSDD17 pKa = 3.02TDD19 pKa = 4.05SYY21 pKa = 12.13GDD23 pKa = 4.06ACDD26 pKa = 3.63NCPNVPNSSQKK37 pKa = 9.86DD38 pKa = 3.41TDD40 pKa = 3.83GNGAGDD46 pKa = 3.66TCDD49 pKa = 3.98NDD51 pKa = 3.16IDD53 pKa = 4.83GDD55 pKa = 4.36GIPNVLDD62 pKa = 3.65NCPKK66 pKa = 10.25VPNPMQTDD74 pKa = 3.36RR75 pKa = 11.84DD76 pKa = 3.6GDD78 pKa = 4.04RR79 pKa = 11.84VGDD82 pKa = 4.0ACDD85 pKa = 3.35SCPEE89 pKa = 4.23VNDD92 pKa = 4.05PMQSDD97 pKa = 3.79MDD99 pKa = 4.0NDD101 pKa = 4.09LVGDD105 pKa = 3.95VCDD108 pKa = 4.47TNQDD112 pKa = 3.17MDD114 pKa = 4.21GDD116 pKa = 4.14GHH118 pKa = 6.78QDD120 pKa = 3.62SRR122 pKa = 11.84DD123 pKa = 3.61NCPDD127 pKa = 3.27VPNSSQLDD135 pKa = 3.58SDD137 pKa = 3.72NDD139 pKa = 4.86GIGDD143 pKa = 3.95EE144 pKa = 5.45CDD146 pKa = 5.19DD147 pKa = 5.83DD148 pKa = 6.4DD149 pKa = 7.03DD150 pKa = 6.24NDD152 pKa = 5.35GIPDD156 pKa = 3.89TRR158 pKa = 11.84PPGPDD163 pKa = 2.91NCRR166 pKa = 11.84LIPNPSQTDD175 pKa = 3.2TDD177 pKa = 4.28GNGVGDD183 pKa = 3.63MCEE186 pKa = 3.88NDD188 pKa = 3.53FDD190 pKa = 4.34NDD192 pKa = 4.02SVIDD196 pKa = 4.89LIDD199 pKa = 3.48VCPEE203 pKa = 3.75SAEE206 pKa = 3.87VTMTDD211 pKa = 3.44FRR213 pKa = 11.84AYY215 pKa = 8.36QTVILDD221 pKa = 3.91PEE223 pKa = 5.2GDD225 pKa = 3.69AQIDD229 pKa = 4.02PNWIVLNRR237 pKa = 11.84GMEE240 pKa = 4.2IVQTMNSDD248 pKa = 3.24PGLAIGYY255 pKa = 6.53TAFNGVDD262 pKa = 3.99FEE264 pKa = 4.94GTFHH268 pKa = 7.41INTATDD274 pKa = 3.36DD275 pKa = 4.34DD276 pKa = 4.73YY277 pKa = 12.04VGFIFGYY284 pKa = 9.23QDD286 pKa = 2.88SSSFYY291 pKa = 10.16VYY293 pKa = 10.6LRR295 pKa = 11.84NALWHH300 pKa = 6.31TGDD303 pKa = 3.47TPGEE307 pKa = 4.12VTLLWKK313 pKa = 10.49DD314 pKa = 3.4PRR316 pKa = 11.84NVGWKK321 pKa = 10.34DD322 pKa = 2.99KK323 pKa = 10.84TSYY326 pKa = 10.02RR327 pKa = 11.84WHH329 pKa = 6.91LSHH332 pKa = 7.13RR333 pKa = 11.84PQVGYY338 pKa = 10.62INVRR342 pKa = 11.84LYY344 pKa = 11.3EE345 pKa = 4.1GMTLVADD352 pKa = 3.69SGMVVDD358 pKa = 3.88TSMRR362 pKa = 11.84GGRR365 pKa = 11.84LGVFCFSQEE374 pKa = 3.83QIIWSNLGYY383 pKa = 10.17RR384 pKa = 11.84CNDD387 pKa = 3.6TVPEE391 pKa = 4.4DD392 pKa = 3.44YY393 pKa = 10.91EE394 pKa = 4.55FYY396 pKa = 10.6RR397 pKa = 11.84KK398 pKa = 9.56QIHH401 pKa = 5.42VRR403 pKa = 11.84VV404 pKa = 3.77

Molecular weight: 44.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6F8ZXA9|A0A6F8ZXA9_9TELE Uncharacterized protein (Fragment) OS=Coregonus sp. 'balchen' OX=861768 GN=CSTEINMANNI_LOCUS508758 PE=4 SV=1
TT1 pKa = 7.13LRR3 pKa = 11.84NPGLIINSPVTLRR16 pKa = 11.84NPGLIINSPVTLRR29 pKa = 11.84NPGLIINSPVTLRR42 pKa = 11.84NPGLIINSPVTLRR55 pKa = 11.84NPGLIINPPVTLRR68 pKa = 11.84NPGLIINSPVTLRR81 pKa = 11.84NPGLITNSPVTLRR94 pKa = 11.84NPGLIINPPVTIRR107 pKa = 11.84NPGLITNPPKK117 pKa = 10.27PWTNHH122 pKa = 4.38QPSITLRR129 pKa = 11.84NPGLITNPPVTLRR142 pKa = 11.84NPGLIINPPVTLRR155 pKa = 11.84NPGLIINSPVTLRR168 pKa = 11.84NPGLIINPPVTLRR181 pKa = 11.84NPGLIINPPLPSEE194 pKa = 4.15NPGLIINPPVTLRR207 pKa = 11.84NPGLIINPPVTLRR220 pKa = 11.84NPGLIINSPVTLRR233 pKa = 11.84NPGLIINPPVTLRR246 pKa = 11.84NPGLIINPPVTLRR259 pKa = 11.84NPGLITNPPVTLRR272 pKa = 11.84NPGLIINPPVTLRR285 pKa = 11.84NPGLIINPPVTLRR298 pKa = 11.84NPGLITNPPVTLRR311 pKa = 11.84NPGLIINPPVTLRR324 pKa = 11.84NPGLIINPPVTLRR337 pKa = 11.84NPGLIINPPVTLRR350 pKa = 11.84NPGLIINPPVTLRR363 pKa = 11.84NPGLIINPP371 pKa = 3.92

Molecular weight: 39.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

41641

0

41641

18652202

9

12605

447.9

49.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.329 ± 0.013

2.203 ± 0.011

5.084 ± 0.01

6.927 ± 0.019

3.293 ± 0.008

6.763 ± 0.016

2.743 ± 0.009

4.111 ± 0.01

5.275 ± 0.016

9.404 ± 0.019

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.46 ± 0.005

3.705 ± 0.008

6.234 ± 0.02

4.78 ± 0.013

5.797 ± 0.012

8.705 ± 0.017

5.967 ± 0.016

6.352 ± 0.013

1.165 ± 0.005

2.703 ± 0.008
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski